Gene
| Gene Model ID | pfu_aug2.0_1713.1_11826 |
|---|---|
| Locus | scaffold1713.1 : 92530 ... 122455 : - |
| To GenomeBrowser | scaffold1713.1:92530..122455 |
| Genes list of scaffold | scaffold1713.1 |
| Synonym | pfu_aug1.0_5322.1_16629 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1713.1_11826.t1 | 2 | 1 | Patched | 300 | 732 | 0.0 | 208.5 | 4.34403e-44 | 1.6e-40 | 138.8 |
| pfu_aug2.0_1713.1_11826.t1 | 3 | 1 | Sterol-sensing | 329 | 368 | 5.4e-36 | 123.3 | 0.041 | 150.0 | 1.7 |
| pfu_aug2.0_1713.1_11826.t1 | 3 | 2 | Sterol-sensing | 375 | 527 | 5.4e-36 | 123.3 | 1.4e-39 | 5.4e-36 | 123.3 |
| pfu_aug2.0_1713.1_11826.t1 | 2 | 2 | Patched | 933 | 1130 | 0.0 | 208.5 | 5.2e-23 | 1.9e-19 | 69.1 |
| pfu_aug2.0_1713.1_11826.t1 | 3 | 3 | Sterol-sensing | 1000 | 1058 | 5.4e-36 | 123.3 | 2.4 | 9000.0 | -4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1713.1_11826.t1 | gi|676464232|ref|XP_009056856.1| | hypothetical protein LOTGIDRAFT_71238, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1713.1_11826.t1 | gi|573894079|ref|XP_006634790.1| | PREDICTED: protein patched homolog 1-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1713.1_11826.t1 | gi|551489125|ref|XP_005796136.1| | PREDICTED: protein patched homolog 1-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_1713.1_11826.t1 | gi|617446569|ref|XP_007567063.1| | PREDICTED: protein patched homolog 2 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_1713.1_11826.t1 | gi|658899083|ref|XP_008432387.1| | PREDICTED: protein patched homolog 2 [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1713.1_11826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1713.1_11826.t1 atgagggcagggaagagggtcagaaatgagagtgttgacacggaattactgaccaggacaagctgggtggacgctggagt cgcttacaaacaaatcaaaaagggtaaagccgatggcaatacatgtgctttgtggcttcgatggcacctccaaaaatatt tgtttaaaataggatgttttcttcaattacactgcggaaaagttttgtttttgggattactttcattgtcattgtgttgt atcggactaaaagaagctaaaatcgagacaaacgtagaaaacctttgggtggaagaggatggacgactagaagaggaact taaatatacgagaaacaccgttggggaggggacaggtactactagtcaacttgttgtacaaacaccaaaaagggggacaa atatactaacagtggaatcgttccagtaccatctagaaactctcaggaaagtctcagaaatagaaattgacctgtttgaa gttacttggaaattccatgacatctgttatctaccagaattcccagaatttgaaagcagtctcgatcagatcgttgctga aattttaccatgcgtgattgtaacgccattggattgtttctgggacggcgcaaaactccttggtccggaccatgccgtat atgcggacatgctnaatgtacaaccatatttgagaaacgcgccagatattggtgcagagttgacaaacggttgccatggt tttgccgccaaatacatgcactggcatgaagacctgattgttggaggtgtcacaaaaaacaaaaccggtcacattgtgag agccgaggcattacaatctattatacaattgatgggacaccaatccttatacgattattggaccaatcattataaaactc acagcattgactggacaccagacaaagccaaagccgtcctagaggcatggcaaaggaaattcaccgaggtcgtaaaaagt tcagcgaacggttcagtggcagatgacatttatgccttttctgcgacatcgcttacagacatcatgaaagaattctcgag tgtaagcgtcatcaggattacattcggctacattctaatgttgttttacgcttgtgtatcattgctaagatggaacaacg ctgtccaatcccagagtggtatcgggatcgcaggtgtcatactggtggcattatcggttgcagctggtctagggatctgc tccttgcttggcatcgttttcaatgcatctacaacacagatcgttccattcctagctcttggtcttggggtagatgacat gtttctcattgctcacacatactcggaaaatgcaatgaacaagcatattcccctagcggatcagacaggagcatgcctta agaggaccggtgtaagcgtccttttaacctccgtaacaaatatgttggcatttttctctgcgtccattatacctatcccc gctctgagggctttttctctgcaggcgggaatcctaacctttttcaaccttgtatccgtcctattattgtttccggctat ttgtagctgggatttgattcgtaaagacaacaaaagagtagatatcttctgttgctttcaaagttatacagataccaaag atactgttattgagctgcaaccccgcccccatagtgagtacgactcacgggagaatgatcgtgaagatcgtagtccccct cgctacagcgtccatccccctacctatagtcccagtccccctcctagctacagttcggttgtgatgcaccagaccgtggc acaaacggacgctgatggtgcccatgctaccaccaacctggccccttcatccaccaatctacccgctaatgaaggagtct tcgttgctaggccaacaccactttgttcagtatgtccatcaacaacatcttctcagcaatgccttacgccaaatgatgat ataacatgcaaagaaaaatttgcccatttacaacgaagatgtctatcaagtacattgacaactatagcaaggaatatgta tgctccatttctgaaaaagagttatgttaaagtattttccgttcttgcttttatcatattcctgagcatatgtacctttg gtgctacaaaagtaaaagacggtctggacttgaccgatgttgtgcctaaagacactcacgaatacaagttcttagaagca caatctgagtacttcggtttctacaatgtttatatgattactaaagatggttttgactatcccaatggacagcgccttct cacgcaataccatagatcgtttcaaaggataggcagcattgtaaaaagggaagatggttcacttcctaacttctggcttg atctcttcaggctatggcttcaagatctacaaaaagcttatgacacagagattttagacggcagaatttcaaaagaccgt tggaatggcaatgcatcagacaatgatctacaaaaagcttatgacacagagattttagacggcagaatttcaaaagaccg ttggaatggcaatgcatcagacaatggtatactggccttcaaactgctggctcaaaccggcgatgttgacaatccagttg acataacaaggattccatcgtccaaacttatagactctgagggaataatatcaccagatggtttctataactatctcact gcatgggtgtccaatgacgcattggcgtacgcgtcttctcaagcggacttccatccccgccctagtacgtggtatcatga cccacaggacttcgactataaagtcccaaaagctcagcccttagtgtatacacagttgcctttctacctaactgatcagt caaacacagagatcatcatcaatacaatcaaggccatcagagatatttgtgatgactttgcagacaaaggtctgcccaac taccctagtggggagccttttacttactgggaacagtacatacatctcaggttctatctagccatggccattctgtgtgt cctaatggtgacgtttgtggtactgaccattgtcctaatgaatccatggctggccagtatcattgtggtgtttctcacga tgatggtggtggagttgtttggtatcatgggcctaggggacatcaaactgagtgcagttcccgccgtcattcttatcgtc agcgtaggaatcggggtggaattcaccgtccatgtatctgtggcttttctcacagccatcggctcaaggaacaagagaac gacggtatctatccaacacacctttgctccagtgattcacggagccatctccacccttttgggaatcgtcatgttggtcg gtgcagaattcgaattcattgtaaaatactttttcaatgtgttggcttgtctggtcattattggtgtactgaacggactg ctgcttttgcccgttgttctttctcttcttggtccaccaggagaggttcgtccaaaagacaatccggaccgattagcaac cccttcgccacaggcctcgccaaagccaaagaagaaaccagtccgcgctacaaggagtagcagacgactgtacccacgtg ttccatcggacatttcactcactactataacggaagaacctacgcagtattcatcgcatgaaatagttgtggaaccggaa gtactggtagaaacgactactgtcccaatcgatggaaggggagcctctaataatagcagtacaagtacaagtagaaataa tacaccaccagactccatggcgtcgacgccaaaggcccatcacgtgacgcgcgtgaaagccacagctacagtcaaagtag aagtccatacacctattccaggttctgtagaaaacgtagatcatgaccatatctataagagcaagagacggaagttaagg gaactggatagctctgattcagattccagtacaaagtcctag |
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Protein
| Protein ID | pfu_aug2.0_1713.1_11826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1713.1_11826.t1 MRAGKRVRNESVDTELLTRTSWVDAGVAYKQIKKGKADGNTCALWLRWHLQKYLFKIGCFLQLHCGKVLFLGLLSLSLCC IGLKEAKIETNVENLWVEEDGRLEEELKYTRNTVGEGTGTTSQLVVQTPKRGTNILTVESFQYHLETLRKVSEIEIDLFE VTWKFHDICYLPEFPEFESSLDQIVAEILPCVIVTPLDCFWDGAKLLGPDHAVYADMXNVQPYLRNAPDIGAELTNGCHG FAAKYMHWHEDLIVGGVTKNKTGHIVRAEALQSIIQLMGHQSLYDYWTNHYKTHSIDWTPDKAKAVLEAWQRKFTEVVKS SANGSVADDIYAFSATSLTDIMKEFSSVSVIRITFGYILMLFYACVSLLRWNNAVQSQSGIGIAGVILVALSVAAGLGIC SLLGIVFNASTTQIVPFLALGLGVDDMFLIAHTYSENAMNKHIPLADQTGACLKRTGVSVLLTSVTNMLAFFSASIIPIP ALRAFSLQAGILTFFNLVSVLLLFPAICSWDLIRKDNKRVDIFCCFQSYTDTKDTVIELQPRPHSEYDSRENDREDRSPP RYSVHPPTYSPSPPPSYSSVVMHQTVAQTDADGAHATTNLAPSSTNLPANEGVFVARPTPLCSVCPSTTSSQQCLTPNDD ITCKEKFAHLQRRCLSSTLTTIARNMYAPFLKKSYVKVFSVLAFIIFLSICTFGATKVKDGLDLTDVVPKDTHEYKFLEA QSEYFGFYNVYMITKDGFDYPNGQRLLTQYHRSFQRIGSIVKREDGSLPNFWLDLFRLWLQDLQKAYDTEILDGRISKDR WNGNASDNDLQKAYDTEILDGRISKDRWNGNASDNGILAFKLLAQTGDVDNPVDITRIPSSKLIDSEGIISPDGFYNYLT AWVSNDALAYASSQADFHPRPSTWYHDPQDFDYKVPKAQPLVYTQLPFYLTDQSNTEIIINTIKAIRDICDDFADKGLPN YPSGEPFTYWEQYIHLRFYLAMAILCVLMVTFVVLTIVLMNPWLASIIVVFLTMMVVELFGIMGLGDIKLSAVPAVILIV SVGIGVEFTVHVSVAFLTAIGSRNKRTTVSIQHTFAPVIHGAISTLLGIVMLVGAEFEFIVKYFFNVLACLVIIGVLNGL LLLPVVLSLLGPPGEVRPKDNPDRLATPSPQASPKPKKKPVRATRSSRRLYPRVPSDISLTTITEEPTQYSSHEIVVEPE VLVETTTVPIDGRGASNNSSTSTSRNNTPPDSMASTPKAHHVTRVKATATVKVEVHTPIPGSVENVDHDHIYKSKRRKLR ELDSSDSDSSTKS |
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