Gene
| Gene Model ID | pfu_aug2.0_172.1_07089 |
|---|---|
| Locus | scaffold172.1 : 87189 ... 98095 : - |
| To GenomeBrowser | scaffold172.1:87189..98095 |
| Genes list of scaffold | scaffold172.1 |
| Synonym | pfu_aug1.0_184.1_36354 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| phd finger protein partial | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_172.1_07089.t1 | 1 | 1 | PHD | 21 | 60 | 4.2e-12 | 45.5 | 6.1e-15 | 7.0e-12 | 44.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_172.1_07089.t1 | gi|585670852|ref|XP_002735868.2| | PREDICTED: PHD finger protein 21A-like [Saccoglossus kowalevskii] | 3.0e-38 |
| pfu_aug2.0_172.1_07089.t1 | gi|698461864|ref|XP_009703720.1| | PREDICTED: PHD finger protein 21A, partial [Cariama cristata] | 1.0e-30 |
| pfu_aug2.0_172.1_07089.t1 | gi|543255674|ref|XP_005419489.1| | PREDICTED: PHD finger protein 21A isoform X4 [Geospiza fortis] | 3.0e-30 |
| pfu_aug2.0_172.1_07089.t1 | gi|449502298|ref|XP_004174499.1| | 3.0e-30 | |
| pfu_aug2.0_172.1_07089.t1 | gi|697851102|ref|XP_009645894.1| | PREDICTED: PHD finger protein 21A isoform X5 [Egretta garzetta] | 3.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_172.1_07089.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07089.t1 atgtaccttctcctttataatccagaaaatcagaaattgaaggcatacaaaatcaggacaaaacagtctggtcagctact gttatgtgacacatgtactagggtgtatcacctccagtgtctggatccacccctgaatgagatccctgaaggaaggtggg gatgcccaaaatgtcaatcaagtggtcggtttggatggtcatctgagacacttgccattgtgaacaacttcatcgccaag aaatctgcaaaagaagaggagcgaaggaagttacagagaaaaaattctgacctagccaatgaaaaggtgttactagataa caaaaaacaacaactgaatgagaatctaaatacccaacttcaaaggaaagatgatttactagagaaaaaccgattgtatc agcaaaaagtggaaaatttaaagaatttcatcaaagttatacaaagctcatag |
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Protein
| Protein ID | pfu_aug2.0_172.1_07089.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07089.t1 MYLLLYNPENQKLKAYKIRTKQSGQLLLCDTCTRVYHLQCLDPPLNEIPEGRWGCPKCQSSGRFGWSSETLAIVNNFIAK KSAKEEERRKLQRKNSDLANEKVLLDNKKQQLNENLNTQLQRKDDLLEKNRLYQQKVENLKNFIKVIQSS |
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