Gene
| Gene Model ID | pfu_aug2.0_172.1_07098 |
|---|---|
| Locus | scaffold172.1 : 334066 ... 357924 : + |
| To GenomeBrowser | scaffold172.1:334066..357924 |
| Genes list of scaffold | scaffold172.1 |
| Synonym | pfu_aug1.0_212227.1_64804 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear pore complex protein nup50 | GO:0005635 GO:0008645 GO:0016020 GO:0016032 GO:0044763 GO:0071704 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_172.1_07098.t1 | 1 | 1 | zf-RanBP | 157 | 185 | 9.2e-11 | 40.6 | 6.0e-14 | 2.2e-10 | 39.4 |
| pfu_aug2.0_172.1_07098.t1 | 1 | 1 | Ran_BP1 | 201 | 318 | 8.6e-11 | 41.9 | 4.7e-14 | 1.8e-10 | 40.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_172.1_07098.t1 | gi|676466073|ref|XP_009057449.1| | hypothetical protein LOTGIDRAFT_233352 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_172.1_07098.t1 | gi|675848274|ref|XP_009009697.1| | hypothetical protein HELRODRAFT_155617 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_172.1_07098.t1 | gi|156363808|ref|XP_001626232.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_172.1_07098.t1 | gi|507637535|ref|XP_004700697.1| | PREDICTED: nuclear pore complex protein Nup50 [Echinops telfairi] | 0.0 |
| pfu_aug2.0_172.1_07098.t1 | gi|585183264|ref|XP_006743226.1| | PREDICTED: nuclear pore complex protein Nup50 [Leptonychotes weddellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_172.1_07098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07098.t1 atgtcaaagagagtagctgaacgagaactgacagatcgtaattgggaccaggaagatgaagaagaggaggtatgagttgg taaagaagatagtgttaaaaaggagaaacaagctcagtatgtacagaacttgaaaaacctgaatgaaagtgttctctcat ggataaaacaacatgtagagaaaaatccgtactgtatactgactccaatattctcagattacgacaagcacctcaaggaa attgaaaaagaggctgaagtatcggggaaaaaagtagaaactgacgtaaaatcttcttttcaaagtaaagctggcagcag tagcttgacaagcgataacagtctatcgtcaaacaaagaagagaataagcagagtgtagcaagtgagagctcaaagccct ctacagcccctgctcagtctgtgccaagtgcgaactcatccagttttatggataaattcaaaccaccatctggtagttgg acatgtgatatatgccttgtatctaatcctggtgacaaagtcaaatgtctggcatgcgagacgcccaagcctggaagtag taaaccagaagaagaagagtatgttccaccaccagtagaaagtgtagaagtgaaagaagagggagccctgtacaccatca agtgcaagatgttttatcagaaatctggatcgtgggaggagagagggctaggatttctccatctgaagaagttgaacgag aagcttcagctgttagtaagaaccgatacagctctaggtaatattttattaaatatcagtataccagcaaccatgccagt gaaaagacagggcaagaacaatgtcagcctgtttgccgttcccaatcctcctatcaaagggattgacgagtccaaacccg ttccatggttaatacgtgtgaaaacaggtcaggatgccgatcagttagtggagaaaatagacgagctgcgtaaagaataa |
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Protein
| Protein ID | pfu_aug2.0_172.1_07098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07098.t1 MSKRVAERELTDRNWDQEDEEEEVXVGKEDSVKKEKQAQYVQNLKNLNESVLSWIKQHVEKNPYCILTPIFSDYDKHLKE IEKEAEVSGKKVETDVKSSFQSKAGSSSLTSDNSLSSNKEENKQSVASESSKPSTAPAQSVPSANSSSFMDKFKPPSGSW TCDICLVSNPGDKVKCLACETPKPGSSKPEEEEYVPPPVESVEVKEEGALYTIKCKMFYQKSGSWEERGLGFLHLKKLNE KLQLLVRTDTALGNILLNISIPATMPVKRQGKNNVSLFAVPNPPIKGIDESKPVPWLIRVKTGQDADQLVEKIDELRKE |
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