Gene
| Gene Model ID | pfu_aug2.0_172.1_07099 |
|---|---|
| Locus | scaffold172.1 : 361653 ... 377365 : - |
| To GenomeBrowser | scaffold172.1:361653..377365 |
| Genes list of scaffold | scaffold172.1 |
| Synonym | pfu_aug1.0_39739.1_70328 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 1-like isoform x2 | GO:0000166 GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_172.1_07099.t1 | 1 | 1 | RRM_1 | 13 | 78 | 1.9e-17 | 62.6 | 6.6e-21 | 2.5e-17 | 62.2 |
| pfu_aug2.0_172.1_07099.t1 | 1 | 1 | RRM_6 | 13 | 78 | 1.1e-12 | 47.6 | 4.2e-16 | 1.6e-12 | 47.2 |
| pfu_aug2.0_172.1_07099.t1 | 1 | 1 | RRM_5 | 31 | 82 | 2.6e-14 | 52.7 | 9.6e-18 | 3.6e-14 | 52.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_172.1_07099.t1 | gi|222137600|gb|ACM45327.1| | rbp1-like RNA-binding protein PD [Bombyx mori] | 4.0e-35 |
| pfu_aug2.0_172.1_07099.t1 | gi|115361548|gb|ABI95863.1| | RNA-binding protein [Bombyx mori] | 3.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_172.1_07099.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07099.t1 atgacaagtcacaaggaatggaaattagaatgtaaagtatacattggggacttgggatatggggctgcaaagcaagaaat tgaggatgcatttatccgatatggcaatgtactgaacgtatggatagcaagaaatcctcctggttttgcctttgtggagt ttgaagatccaagagatgcagaagatgcctgcaaagccttagatggaacgagaataaatggacggcgtgttcgagtagaa atgtcaagtggaaaatcacggtggggaaggagtggcccaccctctagacgtggagggggcagatatagagatgactatgg ccgtcatagaaggtcaagatcaccatcaccaaggagacgatccccatcaccaaggcgacgatcaaggagtagaagcagaa gtagatatgatagaagcaggtcatactcaccttacaacagaagatctggatctccatacgaccgtaggtag |
|
Protein
| Protein ID | pfu_aug2.0_172.1_07099.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_172.1_07099.t1 MTSHKEWKLECKVYIGDLGYGAAKQEIEDAFIRYGNVLNVWIARNPPGFAFVEFEDPRDAEDACKALDGTRINGRRVRVE MSSGKSRWGRSGPPSRRGGGRYRDDYGRHRRSRSPSPRRRSPSPRRRSRSRSRSRYDRSRSYSPYNRRSGSPYDRR |
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