Gene
| Gene Model ID | pfu_aug2.0_1732.1_08544 |
|---|---|
| Locus | scaffold1732.1 : 86176 ... 98045 : - |
| To GenomeBrowser | scaffold1732.1:86176..98045 |
| Genes list of scaffold | scaffold1732.1 |
| Synonym | pfu_aug1.0_15828.1_32597 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna-splicing endonuclease subunit sen2 | GO:0004518 GO:0006396 GO:0008033 GO:0044424 GO:0090305 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1732.1_08544.t1 | 1 | 1 | tRNA_int_endo | 458 | 550 | 6.5e-22 | 77.1 | 2.0e-25 | 1.5e-21 | 75.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1732.1_08544.t1 | gi|676435900|ref|XP_009047707.1| | hypothetical protein LOTGIDRAFT_200224 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1732.1_08544.t1 | gi|291233654|ref|XP_002736770.1| | PREDICTED: tRNA-splicing endonuclease subunit Sen2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1732.1_08544.t1 | gi|390354075|ref|XP_784204.3| | PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_1732.1_08544.t1 | gi|71895431|ref|NP_001025765.1| | tRNA-splicing endonuclease subunit Sen2 [Gallus gallus] | 0.0 |
| pfu_aug2.0_1732.1_08544.t1 | gi|350405669|ref|XP_003487512.1| | PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Bombus impatiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1732.1_08544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1732.1_08544.t1 atgtcacactccaagcccataaatcccaagaggaagaggagggtttacgctgccaaggaacctccatttcctgttcccat aacaacactaacaaatgaggcagcctccagcagccaatggttttattacactggatatctccatggtgaccatgttgttg tcaaacactctggagacattgattttctgtacaaaatggtatgtaatgttgtgaatggtttagtaaatcataactttcct ctatatccatatagctatctccgtcgtctgaaatggtctaacactgaggggacggagggtgatgaatatgacagctcaca ggaaattatagtggaaagagctgatgagctggcaagtaaagatctacatagagatgataatatggagaggaatgtagagg aagaaaaatctacaaataagtctactatgtcagaggaagaaatggaagaaagtgattggccaggaggaggtaactcagca aaaaaaagtgtagtggatgattggggtactggtacgggagatacagacttctggggagaaaagtcagctgttgacagctg ggaaaaagatgagggagatgtagatttctggaatagtactgagactaaatctaaaactgatcttaaagaagaagacatgt caattactgaaagccctcatgtggaaagtcaaaaatatacagaaaaaccatcccatggaatcacaaaaggtagtaattta caaaaagaaaataacatggaagtagacaaggatctgggtttggatagcactgaattaaatagtcgtaaagaggaatttct caatattaaaggtgcaaatgggaacaaatcagagaattttaactccgtatgctttcaaaaaagtactgccaattcaaaga caaatatgtcatctaatacagaaaatgccaaggatgcaacacgtaacataaaagacgaatatgaggagaagagtaacgca agtgagagtaacgtagacacgataaaccagatcaatgagaagaaaccctcaagtttaaaagacaatgaatctgattggtg cagatcagaagaaaataacgatcactgtaatgagagaagttctgatagaacatatgatccaagaagcttagaggaggagg agtgtggttgtctgctggtagtagatgattctgatagtgagtctgaaaccaaaaagaggaaattttcagaattaccatgg aaaccagttaagaagatagacccgtatttcatgaaggaaaacttacatttaagctatgaggaggcatttttcctggctta tggtttgggtagtctgattatgtatggagaaaaccaggagaaattattattaagtggaatgtggaaaatcttttgtcaaa gaaggaagaactttgtacccaagtatatagcctaccattactacagaagtaaaggatgggtacctaaatctggactgaaa tttggatctgattttgttatatataaagaaggtccggctttttaccacagtagttactctgtcattgtgaggatggtgga tagcgagacactaaccacatgtacagggtatcctcagagagacctcgactggaccagactgtctggacttaatagagtta cagaacatgttgccaaggagttattgatctgttatgtactgaagccttcaagcttatcagaggaggacattctgttacct agctgcatctcaaagtttaaagtcaaggaacacaaacaagaggagggtcataccacgaacaatccaaataaaactctcca ggaacacaaacaagaggagggtcataccacgaacaatccaaacagaactccccaggaacaaaaacaagtgaagggtcata ccatgaataaccagaatagaacacaagtgaaggacatgctataa |
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Protein
| Protein ID | pfu_aug2.0_1732.1_08544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1732.1_08544.t1 MSHSKPINPKRKRRVYAAKEPPFPVPITTLTNEAASSSQWFYYTGYLHGDHVVVKHSGDIDFLYKMVCNVVNGLVNHNFP LYPYSYLRRLKWSNTEGTEGDEYDSSQEIIVERADELASKDLHRDDNMERNVEEEKSTNKSTMSEEEMEESDWPGGGNSA KKSVVDDWGTGTGDTDFWGEKSAVDSWEKDEGDVDFWNSTETKSKTDLKEEDMSITESPHVESQKYTEKPSHGITKGSNL QKENNMEVDKDLGLDSTELNSRKEEFLNIKGANGNKSENFNSVCFQKSTANSKTNMSSNTENAKDATRNIKDEYEEKSNA SESNVDTINQINEKKPSSLKDNESDWCRSEENNDHCNERSSDRTYDPRSLEEEECGCLLVVDDSDSESETKKRKFSELPW KPVKKIDPYFMKENLHLSYEEAFFLAYGLGSLIMYGENQEKLLLSGMWKIFCQRRKNFVPKYIAYHYYRSKGWVPKSGLK FGSDFVIYKEGPAFYHSSYSVIVRMVDSETLTTCTGYPQRDLDWTRLSGLNRVTEHVAKELLICYVLKPSSLSEEDILLP SCISKFKVKEHKQEEGHTTNNPNKTLQEHKQEEGHTTNNPNRTPQEQKQVKGHTMNNQNRTQVKDML |
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