Gene
| Gene Model ID | pfu_aug2.0_1732.1_08545 |
|---|---|
| Locus | scaffold1732.1 : 99866 ... 115076 : + |
| To GenomeBrowser | scaffold1732.1:99866..115076 |
| Genes list of scaffold | scaffold1732.1 |
| Synonym | pfu_aug1.0_18341.1_69188 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| smoothened homolog | GO:0001570 GO:0001839 GO:0001947 GO:0003231 GO:0004888 GO:0005515 GO:0008142 GO:0009880 GO:0009952 GO:0010002 GO:0014003 GO:0014033 GO:0016020 GO:0016055 GO:0021508 GO:0021520 GO:0021523 GO:0021537 GO:0021587 GO:0021798 GO:0021984 GO:0030239 GO:0031017 GO:0031018 GO:0031076 GO:0031290 GO:0032474 GO:0035143 GO:0035479 GO:0035912 GO:0042693 GO:0045880 GO:0048557 GO:0048702 GO:0048703 GO:0048741 GO:0048745 GO:0048752 GO:0048795 GO:0051216 GO:0060041 GO:0060830 GO:0060844 GO:0060896 GO:0060956 GO:0071679 GO:0072175 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1732.1_08545.t1 | 1 | 1 | Fz | 12 | 104 | 1.0e-15 | 58.0 | 4.0e-19 | 2.0e-15 | 57.1 |
| pfu_aug2.0_1732.1_08545.t1 | 2 | 1 | Frizzled | 152 | 314 | 0.0 | 254.4 | 0.0 | 0.0 | 185.7 |
| pfu_aug2.0_1732.1_08545.t1 | 2 | 2 | Frizzled | 322 | 435 | 0.0 | 254.4 | 1.2e-24 | 5.8e-21 | 74.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1732.1_08545.t1 | gi|632947455|ref|XP_007889054.1| | PREDICTED: smoothened homolog [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1732.1_08545.t1 | gi|551508874|ref|XP_005805965.1| | PREDICTED: smoothened homolog [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_1732.1_08545.t1 | gi|512830894|ref|XP_002931911.2| | PREDICTED: smoothened homolog [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1732.1_08545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1732.1_08545.t1 atgacaaccacgtcctgtctaggggcctctgtatcattcactcatacatatctaggatttgcgaatgattcaagcacact tgcggaagttgacgaaaagctgacattatggagcggattgaaagctgcaccaaagtgctgggaggtgatacaaccattct tgtgctccgtctatttacccaagtgtgacaatgttgccggtaaagtggagtacccgagtaaagagatgtgtgagaaaacc cgagatccatgtagtattgtatctcacatcaatggatggccgtggttcttagagtgtgaacaatctcacttcctggataa ttgtgtggagcacacctatgaagatgatgtatcgtttaacaagaccggccagtgtaactctccgctcgtacggacggaca accagcagagttggtttgaggaggtggaggggtgtggcattcagtgtcagaacccactgtttactgaggcggaacatgat caagtccatacatttatagccgtgtttggatccttctgtataatatgtacacttttcactatcctgacgttcctgataga ttggaagaatgctaataaatacccggctctcatcttgttctttatcaatatctgtttcttcctggggagtattggttgga tggctcagttctctggagacgctcggacagacatcgtctgtaaagctgatggtaccatcaggaagggagagccagggtcc ggagagacagcttcctgtgtggtggtgtttatcatggtttattacttcctgatggccggagtcgtgtggtttgttatgct ggcatacgcttggcatctcacgttcaaggcactaggcacgcctaaagatgccctagccaataaaacgtcatatttccaca tagcgagctggtccataccactggtactgactattgtgtgcatagctgtgtcagagaaagacaccccagagtatataagt ttaaaagcttcagcaaaaatcaaagaaaccatcattagactaggtatttttaccgtgcttgccttcacgtttgttctcat cacattctccgttcatctatatatatttactaacgagcagagctggcaagatagttttaaacagtacttatattgtgaag ctaatgtgacagtgacaaagactgtctctaatacaacgaccttgacctgctcgatgtcaaaccgtccaagcgtggcagca tacatgatacatatctttgctttctttggagctggaatctctatgagtagttggtcctggaccaaggcatcgctgttgtc atgggaacgattctttaggaaaattttcagaaaaccgtccaataaaccaatcaaattgaagaagcacaagattatagcca aagcttttgaaaagagaaaagagatcaacaatggccgactgtccattagctttgccagcacacatgacgatccgctcggt atgaagtttgatctcaacagtatgagttcacagaacagtatgtcgtccgatttccgagcagcgatgcctaagttagtacg taggagagggggaatgttccatcctacagctggtaccctcaggaggtactcagattctgatgtgggatctgttgcctcca agatggcctccagacgtcagtctttggactcacagatcagtgccgcgcagggtcagttccagcacagtgacgaggagaca gagtacatagaggaaaaaccacgacgaggaaggaagaagaagaagaggagaaagagtaagagaaacaggatacagcctgt actgaaaccaatagccaacgccatggcgtctcatgcttacggaggtagacgtgctggtaggaggtcaagacgtggcagtg ataactctcaaaggagtcgtgcctccgctcacggtatagaactagccatggagaagaacagcatggaagccgtgtccatt acaagttactcccaccaaaacagtctagatgcagctaccttgccagaacctcccaagcatttacagacaaactttgccat cttcactgctagtgcttatatgggtgaaatgcagtcaaagctacaaaacatagagagtacagataaaagtgagattgagg agcctcctccggaggctcctaggaggagagagaggagtggaacagttcagttagatagctctgttctacaggctaaagga ctcctccctgaagtgaaagggaaggacactggaagtagacaaaacagtggaagtaccaaaagtcgcacacagcctgaaaa tctgggcacacttaaacggcaaggcagtgggtctagttctcgtaaaggcaaatcaaaggaaatgaatattgaaatggccc aaacttattatagtgaaaaggccagagtcaactctgcatccagtcgatcaagtcgtgtcagagagggatcagcaaggtct aacgctagtcgccaagggtcggcaggaagtagaataggcttacctgctatacatcatggaccagtcgcaggtcgacatgg ctcagctggcagtcgtcatgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnntcatttggaggtcgtcaagggtcagcagggtcatctgtaagacaagggtcagcaaagtcatcaagggc tggttccgctaagtcaaacaattcatatcaaatgcagctaccagggggaacaactgtggtccaaatagaggatgatgtaa tggaagaaatatcacttaattaa |
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Protein
| Protein ID | pfu_aug2.0_1732.1_08545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1732.1_08545.t1 MTTTSCLGASVSFTHTYLGFANDSSTLAEVDEKLTLWSGLKAAPKCWEVIQPFLCSVYLPKCDNVAGKVEYPSKEMCEKT RDPCSIVSHINGWPWFLECEQSHFLDNCVEHTYEDDVSFNKTGQCNSPLVRTDNQQSWFEEVEGCGIQCQNPLFTEAEHD QVHTFIAVFGSFCIICTLFTILTFLIDWKNANKYPALILFFINICFFLGSIGWMAQFSGDARTDIVCKADGTIRKGEPGS GETASCVVVFIMVYYFLMAGVVWFVMLAYAWHLTFKALGTPKDALANKTSYFHIASWSIPLVLTIVCIAVSEKDTPEYIS LKASAKIKETIIRLGIFTVLAFTFVLITFSVHLYIFTNEQSWQDSFKQYLYCEANVTVTKTVSNTTTLTCSMSNRPSVAA YMIHIFAFFGAGISMSSWSWTKASLLSWERFFRKIFRKPSNKPIKLKKHKIIAKAFEKRKEINNGRLSISFASTHDDPLG MKFDLNSMSSQNSMSSDFRAAMPKLVRRRGGMFHPTAGTLRRYSDSDVGSVASKMASRRQSLDSQISAAQGQFQHSDEET EYIEEKPRRGRKKKKRRKSKRNRIQPVLKPIANAMASHAYGGRRAGRRSRRGSDNSQRSRASAHGIELAMEKNSMEAVSI TSYSHQNSLDAATLPEPPKHLQTNFAIFTASAYMGEMQSKLQNIESTDKSEIEEPPPEAPRRRERSGTVQLDSSVLQAKG LLPEVKGKDTGSRQNSGSTKSRTQPENLGTLKRQGSGSSSRKGKSKEMNIEMAQTYYSEKARVNSASSRSSRVREGSARS NASRQGSAGSRIGLPAIHHGPVAGRHGSAGSRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXSFGGRQGSAGSSVRQGSAKSSRAGSAKSNNSYQMQLPGGTTVVQIEDDVMEEISLN |
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