Gene
| Gene Model ID | pfu_aug2.0_1735.1_18497 |
|---|---|
| Locus | scaffold1735.1 : 3036 ... 25759 : + |
| To GenomeBrowser | scaffold1735.1:3036..25759 |
| Genes list of scaffold | scaffold1735.1 |
| Synonym | pfu_aug1.0_50180.1_05453 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit beta-like | GO:0005216 GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1735.1_18497.t1 | 2 | 1 | Neur_chan_LBD | 9 | 119 | 0.0 | 196.6 | 9.0e-25 | 1.7e-21 | 76.4 |
| pfu_aug2.0_1735.1_18497.t1 | 3 | 1 | Neur_chan_memb | 126 | 292 | 4.4e-26 | 92.2 | 3.0e-16 | 5.6e-13 | 49.3 |
| pfu_aug2.0_1735.1_18497.t1 | 2 | 2 | Neur_chan_LBD | 394 | 556 | 0.0 | 196.6 | 5.3e-38 | 9.9e-35 | 119.6 |
| pfu_aug2.0_1735.1_18497.t1 | 3 | 2 | Neur_chan_memb | 563 | 661 | 4.4e-26 | 92.2 | 2.1e-14 | 3.9e-11 | 43.2 |
| pfu_aug2.0_1735.1_18497.t1 | 3 | 3 | Neur_chan_memb | 678 | 768 | 4.4e-26 | 92.2 | 0.0028 | 5.2 | 6.8 |
Transcript
| Transcript ID | pfu_aug2.0_1735.1_18497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1735.1_18497.t1 atggccgatgtctcaatcctgtctgatgaaaatgttttattggaggtgaaaagcacaggagaggtagaatggtccctccc cagaatcttcacagtccactgtgatatagatgtgacgtattatccgtttgatacacaaacatgcgcagtagaacttacca gctgggcttacgctaaaccggaaatgcagattgcagctctgagaacaaatgtaaatttggaggatcttaagcaagatgga gagtgggacattacatcatccagggtagaaatcagtgatataccagagacaaaaactgatggttcagttgtctacctttc aagaattaattttcatataaccctacggaggaagttttcatattacgtcacttcccttttgcttccagtgttgttaatat catatctcaactcgcttgtcttcattcttccagttcaatctggcgaaaagattggatgtacgttgacaattttattggca ttggccgtgttattgacgctgatcactgacagcattccgtctacttccttaaacatatgtatattatcaacctatttggc aaccgtgttgtgtatcggtgttttatgttgcttgttgactgtgatcataatacgaatctaccatcttccacaaaccagag aaagatcgtcatccctgttatccttcataaacaaagtagtgataccgttgtcatgctggaacggatgttgcaaaggaaaa acatgtcgcaaaaataaagaaaacaccgtggaaccttcgcaaaaccacaaaaaggaagcccactacaagaattttcaaac cagtccaaagcaccctttcaaaggaaatgaaaaggatgtggagaaccatccgtccaaagacaatgatggaacagaggaaa tcccagagatggagaaagattacacctggaacgaaatagcgtgcatgttggactggtttttcttcgtgacaaccatcgtg gtcaccactgtaatgacgattgttttcttcatggctttggccttgggaggatcttcaattggtatttctatttcagctgt ttcaataacagtgtcgtcagtgtatgctgcctggagcagtagtgacgttcttgccataagaaatagcatcctttccactg ccacttacagcccggcgataaggccgtcagaaaatactacagtcagggctggactaagtgtactgaccatcaatgacttg gactggacagactctcgtctgacatggaacacgacgacatacccggatgtaagcactattcacgtgaaggaagcagaagt ttggacgcctgaatttttcgtggacaattcagtagccgattcctcaatcctgtcagataaacatgttttattggtggtaa aaagcaccggagagcttatatggtccctccccagaatcttcaccgtccactgtgatatagatgtgacgtattatccgttt gatacacaaacatgcgcagtagaacttaccagctgggcttacgctaaaccggaaatgcagtttgcagctctgagaacaca tgttaatttggaggatcttaagcaagatggagaatgggatattacatcatccagggtagagatcagtgatataccagaga caaaaactgatggttcagttgtctacctttcaagagttaactttcatataaccctacagaggaagttttcatattacgtc acttccatcttgcttccagtgttgttgatatcttatctcaactcgattgtcttcattcttccagtccaatctggcggaaa gattggatgtacgttgacaattttattggcattgtccgtgttactgacgctgatcactgacagcattccgtctacttcct tacacatatgtatattatcaacctatttggcaagcgtgttgtgtatcggtgctttatgttgcttgttgactgtaatcata atacgaatctaccatcttccacaaaccagagaaagatcgtcatccctgttatccttcatgaacaaagtagtgataccttt gtcatgctggaacggatgttgcaaaggaaaagtatgtcgcaaaaaaaaagaaaacactgtggaaccttcgcaaaaccaca aaaaagaagcccactacaagaatgtccaaaccagtccaaagcaccctttgaaaggaacaagtgaaaaggatgtagaaaat attccgtccaaagacaatgatggaacagaggaaattccagaggtggagaaagattacacctggaacgaaatagcgtgcat gttggactggtttttcttcgtgacaacaatcgcggtcaccactgtaatgacgattgttttcttcatggctttggccttgg gaggatctaacagtaaancatttagactaaagaccaataacaattaa |
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Protein
| Protein ID | pfu_aug2.0_1735.1_18497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1735.1_18497.t1 MADVSILSDENVLLEVKSTGEVEWSLPRIFTVHCDIDVTYYPFDTQTCAVELTSWAYAKPEMQIAALRTNVNLEDLKQDG EWDITSSRVEISDIPETKTDGSVVYLSRINFHITLRRKFSYYVTSLLLPVLLISYLNSLVFILPVQSGEKIGCTLTILLA LAVLLTLITDSIPSTSLNICILSTYLATVLCIGVLCCLLTVIIIRIYHLPQTRERSSSLLSFINKVVIPLSCWNGCCKGK TCRKNKENTVEPSQNHKKEAHYKNFQTSPKHPFKGNEKDVENHPSKDNDGTEEIPEMEKDYTWNEIACMLDWFFFVTTIV VTTVMTIVFFMALALGGSSIGISISAVSITVSSVYAAWSSSDVLAIRNSILSTATYSPAIRPSENTTVRAGLSVLTINDL DWTDSRLTWNTTTYPDVSTIHVKEAEVWTPEFFVDNSVADSSILSDKHVLLVVKSTGELIWSLPRIFTVHCDIDVTYYPF DTQTCAVELTSWAYAKPEMQFAALRTHVNLEDLKQDGEWDITSSRVEISDIPETKTDGSVVYLSRVNFHITLQRKFSYYV TSILLPVLLISYLNSIVFILPVQSGGKIGCTLTILLALSVLLTLITDSIPSTSLHICILSTYLASVLCIGALCCLLTVII IRIYHLPQTRERSSSLLSFMNKVVIPLSCWNGCCKGKVCRKKKENTVEPSQNHKKEAHYKNVQTSPKHPLKGTSEKDVEN IPSKDNDGTEEIPEVEKDYTWNEIACMLDWFFFVTTIAVTTVMTIVFFMALALGGSNSKXFRLKTNNN |
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