Gene
| Gene Model ID | pfu_aug2.0_174.1_13724 |
|---|---|
| Locus | scaffold174.1 : 4636 ... 10772 : + |
| To GenomeBrowser | scaffold174.1:4636..10772 |
| Genes list of scaffold | scaffold174.1 |
| Synonym | pfu_aug1.0_6153.1_45361 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polycystic kidney disease protein 1-like 2-like | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_174.1_13724.t1 | 1 | 1 | PLAT | 4 | 56 | 5.0e-06 | 26.8 | 2.3e-09 | 1.1e-05 | 25.7 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 1 | Ion_trans | 101 | 126 | 2.6e-09 | 36.6 | 0.26 | 1300.0 | -1.6 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 2 | Ion_trans | 141 | 307 | 2.6e-09 | 36.6 | 0.11 | 560.0 | -0.4 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 1 | PKD_channel | 280 | 319 | 0.0 | 276.4 | 0.57 | 2800.0 | -3.7 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 2 | PKD_channel | 385 | 421 | 0.0 | 276.4 | 0.3 | 1500.0 | -2.7 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 3 | Ion_trans | 398 | 412 | 2.6e-09 | 36.6 | 0.77 | 3800.0 | -3.1 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 3 | PKD_channel | 440 | 653 | 0.0 | 276.4 | 0.0 | 6.44597e-44 | 150.0 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 4 | PKD_channel | 648 | 852 | 0.0 | 276.4 | 6.30024e-42 | 3.1e-38 | 131.3 |
| pfu_aug2.0_174.1_13724.t1 | 4 | 4 | Ion_trans | 656 | 844 | 2.6e-09 | 36.6 | 5.2e-13 | 2.6e-09 | 36.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_174.1_13724.t1 | gi|391334112|ref|XP_003741452.1| | PREDICTED: polycystic kidney disease protein 1-like 2-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_174.1_13724.t1 | gi|524898281|ref|XP_005105591.1| | PREDICTED: polycystin-2-like, partial [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_174.1_13724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_174.1_13724.t1 atggcagtatcaaaaccccttggtcaactgacttacctgcatttatggcacgacaattcgggaaaagggaagtttgcctc ttggtacatgcgcagtatagttgtccgtgacgttcaaacaaatgacaagtacattttcatcgccaacaaatggtttgccg tagaggaagacgatggactgatcgacagaataattccagttgctggaaaagagcagatgacagaattcagccatttattc tcagagaagaccacaaagagtttgagtgacggccatctttggttctccgttgtagccagacctccacagagccggttcac acgtgtacaacgtgtgtcgtgttgcctatgcctcctgttcatgaccatggtcacaaatgccatgttctatgagacagctg aaaacactgatgccaacaacactttcacgttcggaccatttgcattgacacctgagcagatctacattggagtggtcagc aacctgattgtatttcccatcaacttcttggtagtgctgctattcagaaagtcacgtccaaggaagaagcgaccatcgag agtccttgaagctcttaaagaaacatccaaacctgctacctctgtaacagacatcaatccaactttgaaagcatcgcaaa gctcgtgcccaacacctcaaatattggataaaaatagaccggacacatcgatgtcacgagcacaaacctcgttatcgatt gttgacgtagcacattccaataaaaacaagaagaagaaacattgggatctgccgtggtggtttgtgataattggttggat tttgctctggcttgcgaccttgacctcggcagcgtttgtgacgttttatggcgtccagttccaggatctcaaatgcaaga aatggatcacttccatgttaatatcattttttgcgtcagtttttataacacagccggttaaggtgttcctgactgcgatt ttcttctctttgataataaaaaatcccggaggcgatgacgatgaggaggcagaggatgaagagaatgctcagctgcaaca agacgaagaattattacataacaatgaaggtgaagtgttctcgttcacaaaaccacgtaaggctgcataccgacctcctg acccgagtctgcttcaaaaagcgcgggaagttcgaatgaaggagatcaaaatgtgggcagtagtacgcgagatcgtcttc tatgcatttttcttatggattttaatggtgatcagctaccgtaacaggagctataactccttcttatacaagcagagctt ggataaagtcttcatcgccaccaatgacacaagacatcattacatgaagataaaaaatcagaatgatttctgggtatggg caaagagtggactgattactggtttacgtgctagtgtatggtataacgacgatcaaccattgttcatgcgtgggtacatc aacgacaaacagtcacgaatcatgggatacgccaccatgcggcagctcaggatcagaccaggtggaacgtgcaagatccc aaaggatatgcagaacgtaatttctgagtgtaatgatgcttacgatatagacgaacaggatgaagggacgtaccgtgctg ggtggctccccctgacgggtaactcatctgtggacgaggacagggaggaatacaagtatctcacggccaaatcccttgac ggctacccttactttggtaccatggcagtgtacgggggaggtggttacattgtcaggcttcgggggaataccactgtttt gtatgataaacttgaccaactacaaagggagggatgggttgacaagtacacaagggctgttttcatagaattcacaggtt acaatcctggtgttaatctgtttggtatatcaactctactcttggaagttctgccaagtcaaggattcttccccgcgtac aggtttgagcctgtgatgttactaccgtacatggactcccttttgagaggtcttatacgggagaagaaggaattcttcag agaattttggaatctagtcgacatcgggatatgcgcaatgtcggtcactgcaatcgtcatttatttctatcgtctgtttg agacgaacagactgacagaacgatttaaaatatcacacggtaatgaatacatgaagttccagtatgtcggttattggagt gaattgttcagttatatcattggttggctcgtattcttcgcttcacttaaatttctgaaattgctacgtttcaacaagag gatgtctcttttggcctcaacgctaaaaagctccgctaaagatttgatgcacttcagcgtcatctttaacattatattta tggcattcatacagcttttctatctggtttatgcggcaaacattacctcattcaagacattcgtcagttcctgtgagtct ggaatcgtcatgatgatgggcaagtttgatatctacgagatgatagccgtggaacccatcatgacccagattttcatttt cggttacgtcgtcactattaccttcataacggtcaacatgttcttatccattctgaatgaaacattctcctccgtccgaa gcgatattgccaaacaatgcaatgactacgaaatcgtcgacttcatgatgaaccgcttcaaaatgtggactggacttggc acacctgataccaatgccatgaaaccggatgtagtcaaaggcggagaaaacggagaacgggaagtagaagaatttccgga acgaattgaccgattgctacattccatctcgtacatgtatatggagaaggacagactggatactctactggagatgaaca gtggcaaggcgcgaatgaaggcaatgggaatggggatgtcacaccctcccccggctgtcagcagaaagtaccaacaacca ccaaataaaatgacaatggtccacactaactattaa |
|
Protein
| Protein ID | pfu_aug2.0_174.1_13724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_174.1_13724.t1 MAVSKPLGQLTYLHLWHDNSGKGKFASWYMRSIVVRDVQTNDKYIFIANKWFAVEEDDGLIDRIIPVAGKEQMTEFSHLF SEKTTKSLSDGHLWFSVVARPPQSRFTRVQRVSCCLCLLFMTMVTNAMFYETAENTDANNTFTFGPFALTPEQIYIGVVS NLIVFPINFLVVLLFRKSRPRKKRPSRVLEALKETSKPATSVTDINPTLKASQSSCPTPQILDKNRPDTSMSRAQTSLSI VDVAHSNKNKKKKHWDLPWWFVIIGWILLWLATLTSAAFVTFYGVQFQDLKCKKWITSMLISFFASVFITQPVKVFLTAI FFSLIIKNPGGDDDEEAEDEENAQLQQDEELLHNNEGEVFSFTKPRKAAYRPPDPSLLQKAREVRMKEIKMWAVVREIVF YAFFLWILMVISYRNRSYNSFLYKQSLDKVFIATNDTRHHYMKIKNQNDFWVWAKSGLITGLRASVWYNDDQPLFMRGYI NDKQSRIMGYATMRQLRIRPGGTCKIPKDMQNVISECNDAYDIDEQDEGTYRAGWLPLTGNSSVDEDREEYKYLTAKSLD GYPYFGTMAVYGGGGYIVRLRGNTTVLYDKLDQLQREGWVDKYTRAVFIEFTGYNPGVNLFGISTLLLEVLPSQGFFPAY RFEPVMLLPYMDSLLRGLIREKKEFFREFWNLVDIGICAMSVTAIVIYFYRLFETNRLTERFKISHGNEYMKFQYVGYWS ELFSYIIGWLVFFASLKFLKLLRFNKRMSLLASTLKSSAKDLMHFSVIFNIIFMAFIQLFYLVYAANITSFKTFVSSCES GIVMMMGKFDIYEMIAVEPIMTQIFIFGYVVTITFITVNMFLSILNETFSSVRSDIAKQCNDYEIVDFMMNRFKMWTGLG TPDTNAMKPDVVKGGENGEREVEEFPERIDRLLHSISYMYMEKDRLDTLLEMNSGKARMKAMGMGMSHPPPAVSRKYQQP PNKMTMVHTNY |
|