Gene
| Gene Model ID | pfu_aug2.0_174.1_13736 |
|---|---|
| Locus | scaffold174.1 : 341971 ... 342663 : - |
| To GenomeBrowser | scaffold174.1:341971..342663 |
| Genes list of scaffold | scaffold174.1 |
| Synonym | pfu_aug1.0_3272.1_01386 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_174.1_13736.t1 | 2 | 1 | zf-CCHC_2 | 80 | 102 | 2.0e-06 | 27.1 | 1.2e-06 | 0.0016 | 17.9 |
| pfu_aug2.0_174.1_13736.t1 | 2 | 1 | zf-CCHC | 84 | 99 | 1.6e-14 | 53.0 | 6.1e-11 | 8.3e-08 | 31.8 |
| pfu_aug2.0_174.1_13736.t1 | 2 | 2 | zf-CCHC | 107 | 122 | 1.6e-14 | 53.0 | 6.5e-09 | 8.7e-06 | 25.4 |
| pfu_aug2.0_174.1_13736.t1 | 2 | 2 | zf-CCHC_2 | 107 | 124 | 2.0e-06 | 27.1 | 3.1e-05 | 0.042 | 13.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_174.1_13736.t1 | gi|71416081|ref|XP_810084.1| | universal minicircle sequence binding protein (UMSBP) [Trypanosoma cruzi strain CL Brener] | 3.0e-06 |
| pfu_aug2.0_174.1_13736.t1 | gi|71418284|ref|XP_810806.1| | universal minicircle sequence binding protein (UMSBP) [Trypanosoma cruzi strain CL Brener] | 3.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_174.1_13736.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_174.1_13736.t1 atggcttctcaacaagtttctgatattgatttaaccaactttgaatttcaatggccaaacggcaatgtacagcagcctgc agacaacagaatggacgacatccatagcaattgtcagcgcatgactgccatgatggaagatgtacagacatccatttcca agatgcaagccgacatccaaacattgatggatagcaagagaaatgtcgaagaaggagacgaaccacccaagaagaaagcc agatacgtatgttacaattgcaatgaagagggacattttgctaccgaatgtcctcagtcgcccaagaagcagaacgacat ttgttacaagtgccaaggcacgggacactggaccagagactgtcctgtacaacaggaatacaacacgtatccgggaccca acaactacggaagctacaggccaaattaccccagacccatctatggagcaaacagaggacgacccatctatggagcaaac aggggacgcccacctatagcgaaacagaatgtgaggccacagtacagtgcatag |
|
Protein
| Protein ID | pfu_aug2.0_174.1_13736.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_174.1_13736.t1 MASQQVSDIDLTNFEFQWPNGNVQQPADNRMDDIHSNCQRMTAMMEDVQTSISKMQADIQTLMDSKRNVEEGDEPPKKKA RYVCYNCNEEGHFATECPQSPKKQNDICYKCQGTGHWTRDCPVQQEYNTYPGPNNYGSYRPNYPRPIYGANRGRPIYGAN RGRPPIAKQNVRPQYSA |
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