Gene
| Gene Model ID | pfu_aug2.0_1740.1_01804 |
|---|---|
| Locus | scaffold1740.1 : 86724 ... 105375 : - |
| To GenomeBrowser | scaffold1740.1:86724..105375 |
| Genes list of scaffold | scaffold1740.1 |
| Synonym | pfu_aug1.0_396.1_65388 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1740.1_01804.t1 | 3 | 1 | DEAD | 49 | 124 | 4.7e-31 | 107.5 | 3.0e-21 | 8.9e-18 | 64.3 |
| pfu_aug2.0_1740.1_01804.t1 | 3 | 2 | DEAD | 127 | 211 | 4.7e-31 | 107.5 | 6.1e-14 | 1.8e-10 | 40.5 |
| pfu_aug2.0_1740.1_01804.t1 | 3 | 3 | DEAD | 286 | 324 | 4.7e-31 | 107.5 | 0.55 | 1600.0 | -1.6 |
| pfu_aug2.0_1740.1_01804.t1 | 1 | 1 | Helicase_C | 286 | 362 | 3.2e-22 | 78.1 | 2.3e-25 | 6.9e-22 | 77.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1740.1_01804.t1 | gi|524868001|ref|XP_005090807.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1740.1_01804.t1 | gi|676491907|ref|XP_009065747.1| | hypothetical protein LOTGIDRAFT_133165, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1740.1_01804.t1 | gi|390348110|ref|XP_001199247.2| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_1740.1_01804.t1 | gi|585665996|ref|XP_006817035.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1740.1_01804.t1 | gi|327276465|ref|XP_003222990.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1740.1_01804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1740.1_01804.t1 atgaaagagagggttaaaagaatttttgttttacagaatcctgctatgcgtggtcactctaacaaagatatccaatcctt cacagagtttggattaggaaagggaattatagagcaactcagaatgatgaacatcgaatctcctactccaattcagaaat taaccatacctgagttacttcgtgggaaaaatgtgctgtgtgctgctgatacaggcagcggcaagaccctggcataccta ttaccagttctacagtctataacagaacagagagatatggacagatcgagtgatgatcacaaaacaacagcctcatctcc aagagccattatactagtgccatccaaggaattagcactgcaaattcagaatttaaaaaatacagaaatggacatcctta ttacttcgccagggatattaaaaaagttatctaattataagctgataagttccagcaatctgcagcaccttgttttagat gaagccgattcgttactggatgacagtttcagctctgatattagacacatcttagatacactcaaaatcagtacaggtgc tttgaccgcagacagtaagggtggatccgttggtgtacagataagcctagtcagtgccactatgccaaggggcatcgcag gcatcataggaaatatgcttgatactgaaactttccgtaagataacgacaaaaggtcttcactttttattgccacatgta acacagaagttccatagattaggccaatcagctaggagtgaggaaattcttaggttagccaggcattcaaagtcgaaagg taaagtgatgatgatattttgtaacaagcacggcacatcgtactggttgtcggactatcttaacgaaaacggaatcaaca atatgtgtctaaatggagatatgaaacctgagagaagagcctttatctttgaaaagttccaagaggcacagtctgatatt cttgtgtgtacagacatagcatcgcgaggtttagatacgataagggtcaatcatgtagtaaactatgagttccccgaata catgtcggattacatacacagggtggggcgggtagggcgagtagggagtcaaggtcattgtgaggtcaccagttttattg tacacccatgggatgtggaacttctatggagaatagagacggcagctagaagctccatggagttagaaaatgtgaacgct aatataagacgtaaagaggaagcaatgtatgaggaaagaatggaacgtaatctgaaaaataaagatgaaacggatgatga ttcatttcaggatgataatattgaatcaagattttaa |
|
Protein
| Protein ID | pfu_aug2.0_1740.1_01804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1740.1_01804.t1 MKERVKRIFVLQNPAMRGHSNKDIQSFTEFGLGKGIIEQLRMMNIESPTPIQKLTIPELLRGKNVLCAADTGSGKTLAYL LPVLQSITEQRDMDRSSDDHKTTASSPRAIILVPSKELALQIQNLKNTEMDILITSPGILKKLSNYKLISSSNLQHLVLD EADSLLDDSFSSDIRHILDTLKISTGALTADSKGGSVGVQISLVSATMPRGIAGIIGNMLDTETFRKITTKGLHFLLPHV TQKFHRLGQSARSEEILRLARHSKSKGKVMMIFCNKHGTSYWLSDYLNENGINNMCLNGDMKPERRAFIFEKFQEAQSDI LVCTDIASRGLDTIRVNHVVNYEFPEYMSDYIHRVGRVGRVGSQGHCEVTSFIVHPWDVELLWRIETAARSSMELENVNA NIRRKEEAMYEERMERNLKNKDETDDDSFQDDNIESRF |
|