Gene
| Gene Model ID | pfu_aug2.0_1746.1_21769 |
|---|---|
| Locus | scaffold1746.1 : 1 ... 5995 : - |
| To GenomeBrowser | scaffold1746.1:1..5995 |
| Genes list of scaffold | scaffold1746.1 |
| Synonym | pfu_aug1.0_38555.1_26835 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1746.1_21769.t1 | 5 | 1 | TSP_1 | 22 | 36 | 4.4e-10 | 39.5 | 0.59 | 2200.0 | -1.2 |
| pfu_aug2.0_1746.1_21769.t1 | 4 | 1 | GCC2_GCC3 | 135 | 148 | 3.5e-12 | 45.7 | 0.00034 | 1.3 | 8.7 |
| pfu_aug2.0_1746.1_21769.t1 | 5 | 2 | TSP_1 | 138 | 144 | 4.4e-10 | 39.5 | 2.1 | 7600.0 | -2.9 |
| pfu_aug2.0_1746.1_21769.t1 | 4 | 2 | GCC2_GCC3 | 143 | 190 | 3.5e-12 | 45.7 | 9.4e-16 | 3.5e-12 | 45.7 |
| pfu_aug2.0_1746.1_21769.t1 | 2 | 1 | Laminin_G_3 | 212 | 343 | 3.2e-09 | 37.2 | 8.6e-13 | 3.2e-09 | 37.2 |
| pfu_aug2.0_1746.1_21769.t1 | 5 | 3 | TSP_1 | 386 | 437 | 4.4e-10 | 39.5 | 1.2e-13 | 4.4e-10 | 39.5 |
| pfu_aug2.0_1746.1_21769.t1 | 4 | 3 | GCC2_GCC3 | 435 | 440 | 3.5e-12 | 45.7 | 4.0 | 15000.0 | -4.9 |
| pfu_aug2.0_1746.1_21769.t1 | 5 | 4 | TSP_1 | 463 | 470 | 4.4e-10 | 39.5 | 0.23 | 870.0 | 0.1 |
| pfu_aug2.0_1746.1_21769.t1 | 2 | 2 | Laminin_G_3 | 483 | 578 | 3.2e-09 | 37.2 | 0.42 | 1600.0 | -0.8 |
| pfu_aug2.0_1746.1_21769.t1 | 4 | 4 | GCC2_GCC3 | 530 | 543 | 3.5e-12 | 45.7 | 1.6 | 5800.0 | -3.1 |
| pfu_aug2.0_1746.1_21769.t1 | 5 | 5 | TSP_1 | 558 | 570 | 4.4e-10 | 39.5 | 0.74 | 2700.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1746.1_21769.t1 | gi|524900308|ref|XP_005106575.1| | PREDICTED: fibropellin-1-like isoform X1 [Aplysia californica] | 2.0e-18 |
| pfu_aug2.0_1746.1_21769.t1 | gi|524900310|ref|XP_005106576.1| | PREDICTED: fibropellin-1-like isoform X2 [Aplysia californica] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_1746.1_21769.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1746.1_21769.t1 atggaaactactggatatgaaggagtgtgtcccgatagtacggagtgtaatgttgacaatgtagacgtcacatgtggtcc tactacgtctggcaagaggagaaagagagagtcatcattaattgacaaacttatggagctttgcagaataagaagatcta cgcatacgcatgaaatacgtgttgacttcagagtaacaatagtcccaaatgatacatcaagaacgcctatagactcattt tattactatgaaggtgtcatgaacgacatgtcagacgaaattcgcgaattggtacaaaatggagatatgaatgttggtgg ggttacggcagattcatcaacatatgcggttggcttcagcgaggtgatttgtccagataattataatttccaatggtcaa cgctaaaatgtgtaccatgctcagagggaacatatttaaacggaagtacccagagttgccataactgtccagttggaacg tataaggatactgttgattctgctagctgcacacaatgtccaccgctgacttcaacattaggaagtggtgccacgaactc cacacagtgtatcgcttttgaccttcacttgagttcaaaagaagataacatctctcttgggagttttaatgaatcagtta tgtcgtggacgctagcatcatggataaacttcaacagcacaaagtcatctattgagatcctcttccagtccgcttctgga gtatcatcaatacaagtatcgcccttgaacacgaccctgaacctccttactgataaatctacacaccaaattgaactaca agatggatcatggaaccatatttcttcttcggtcgatattgcttcaaagagatggaagctgtacattaatggacaggaaa ccttcaattcggcgtttacaatgtccgaaattgacgataactaccgattacagtcaggagctaacatcgtagttgctgca agggaatctgaccgtgtgggtataagccagtttctgatgtttgacaatgtacttacgacgacggagataacgattttatc aaattcctgtatgaccatacatccgaacacatcgctcagtccagcaagtttgaatcaaacaagtgtagaagggcacataa ctgttcctagccaatgtgatgtaaatggaggttggagcgattggatggaatggtcggtgtgttccgagacgtgtggtgga ggggtacgtttaaggagcaggctctgtaacagtcccccacccgacagtgatggtgttccttgtaaccaatccttatctaa tgaaacagacagttgtaacacagaagattgtcccacgtgtggttctcttcgccgaggttatggcaacgtcctttcttgtt ctcttacaaacgatagtcatcaaatctgcactgtatcatgccgagatggacttacatttttgccaaacaacctcccggat gacgagtacatttgcggtcctaatactagttacagctggtcgaacaatcacaccttgcccgcctgctcaagaccacgtgg tcccctgtcaatgtctacgacaacagtgtttacctatacaagtatgacgtgtacagaagcatcgtctgccgtcaccatga tacagcagtcggcgtcacagtatcaatgtgtacacaacggaacgtgcaccatgtccactgatactccagattgcacgaca gggatagggaagaggtcaacaactgtcaatgtccacattactttcactgtccagttacagaacaattctgacttaagtct agagacgcttactagtattgaaaacg |
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Protein
| Protein ID | pfu_aug2.0_1746.1_21769.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1746.1_21769.t1 METTGYEGVCPDSTECNVDNVDVTCGPTTSGKRRKRESSLIDKLMELCRIRRSTHTHEIRVDFRVTIVPNDTSRTPIDSF YYYEGVMNDMSDEIRELVQNGDMNVGGVTADSSTYAVGFSEVICPDNYNFQWSTLKCVPCSEGTYLNGSTQSCHNCPVGT YKDTVDSASCTQCPPLTSTLGSGATNSTQCIAFDLHLSSKEDNISLGSFNESVMSWTLASWINFNSTKSSIEILFQSASG VSSIQVSPLNTTLNLLTDKSTHQIELQDGSWNHISSSVDIASKRWKLYINGQETFNSAFTMSEIDDNYRLQSGANIVVAA RESDRVGISQFLMFDNVLTTTEITILSNSCMTIHPNTSLSPASLNQTSVEGHITVPSQCDVNGGWSDWMEWSVCSETCGG GVRLRSRLCNSPPPDSDGVPCNQSLSNETDSCNTEDCPTCGSLRRGYGNVLSCSLTNDSHQICTVSCRDGLTFLPNNLPD DEYICGPNTSYSWSNNHTLPACSRPRGPLSMSTTTVFTYTSMTCTEASSAVTMIQQSASQYQCVHNGTCTMSTDTPDCTT GIGKRSTTVNVHITFTVQLQNNSDLSLETLTSIEN |
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