Gene
| Gene Model ID | pfu_aug2.0_1746.1_21770 |
|---|---|
| Locus | scaffold1746.1 : 7210 ... 15025 : - |
| To GenomeBrowser | scaffold1746.1:7210..15025 |
| Genes list of scaffold | scaffold1746.1 |
| Synonym | pfu_aug1.0_6258.1_45399 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1746.1_21770.t1 | 4 | 1 | Sushi | 59 | 73 | 2.0e-08 | 34.4 | 0.53 | 2000.0 | -0.8 |
| pfu_aug2.0_1746.1_21770.t1 | 4 | 2 | Sushi | 124 | 144 | 2.0e-08 | 34.4 | 0.46 | 1700.0 | -0.6 |
| pfu_aug2.0_1746.1_21770.t1 | 2 | 1 | HYR | 136 | 216 | 5.9e-31 | 106.3 | 6.3e-19 | 2.3e-15 | 56.3 |
| pfu_aug2.0_1746.1_21770.t1 | 3 | 1 | Big_3_4 | 171 | 203 | 7.5e-06 | 26.1 | 0.026 | 98.0 | 3.3 |
| pfu_aug2.0_1746.1_21770.t1 | 4 | 3 | Sushi | 221 | 270 | 2.0e-08 | 34.4 | 2.0e-05 | 0.076 | 13.3 |
| pfu_aug2.0_1746.1_21770.t1 | 4 | 4 | Sushi | 301 | 344 | 2.0e-08 | 34.4 | 7.2e-10 | 2.7e-06 | 27.6 |
| pfu_aug2.0_1746.1_21770.t1 | 3 | 2 | Big_3_4 | 331 | 346 | 7.5e-06 | 26.1 | 0.00026 | 0.98 | 9.7 |
| pfu_aug2.0_1746.1_21770.t1 | 2 | 2 | HYR | 350 | 429 | 5.9e-31 | 106.3 | 3.2e-16 | 1.2e-12 | 47.6 |
| pfu_aug2.0_1746.1_21770.t1 | 3 | 3 | Big_3_4 | 385 | 423 | 7.5e-06 | 26.1 | 0.00014 | 0.53 | 10.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1746.1_21770.t1 | gi|390363038|ref|XP_003730284.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Strongylocentrotus purpuratus] | 8.0e-26 |
| pfu_aug2.0_1746.1_21770.t1 | gi|585712946|ref|XP_006825005.1| | PREDICTED: uncharacterized protein LOC100367903 [Saccoglossus kowalevskii] | 2.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_1746.1_21770.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1746.1_21770.t1 atgttaaagctttctgtaaccatacagtgctgtattattgctatacttactcatgagataaaagtgtcgtcagagggtgt cgacaagccgaaaaattgtgcggcagctgatcttggtctttctgatatcattcaagaaacgatctttcttgatgatgacc gatatatgatagacgaagtaacatttgtctgtagacttggcaaatgggaaaaagaaatgccaggtcccgaccatgagaga aatgtaaagcttaaaacgtacgctgtgaaacgacaaaagcgctcattttttaaatctatagtcaaaggagtaggcagtat atttaaaggtgtagggaagtttattggaggagtattgggagcccttgcttgtattttcggctgtcgggaacgagatcctc caaacagcccaccctctgtaacgtgtcctgaaaacatgatggatatttacgcattgagaggagaggaatcccgggtagtc acatgggaaacaccaacaggtcacgataatgaagatggaagtctagcggcaacccttgttcaaggagccgaacctggatc gttgtttcaaagaggaacccataccattatttactctgtaacagacagtaaggcatatacagcaacttgcaatttccaaa tcagagtttctgtcatcaactgtcagcctatcccatggcctgataatggatatatatattgtggtcaggtcgggtttata tggggaacatcttgtgacgttggctgtaatgatggattcgaaataagcacggggacatcaaacaacaggcagagtgtagt gtgtgaaaaggaccccaacaatggtggaatatacgacatagatatacctacatgctcagcaataatatgtaatggggacg ccagtgagctacatccagagaatggaaatgctgtatgtacacatagtaactataaatacgacacatcttgtttcaccagc tgtgacagcggatactcctcttccggattggtaacaacaacatgtcaagatgatggaacctggtcagcaactttaaaggg atgtcaagatagtgaaccaccaaccctctcaaattgcccaggcacattaagcgtctatgcggaccgtggtgagacatcag ctacgttaatctggaatgcacccatggcgtcagataactctggtaacgtaacgttagaacagacgcttggatctccccct ggatcagtgtttgaagaaggtttacacgaaatacgatacagggcaatagatggaagagggaacacatcaccagattgtat attcttcctgcaggttgaacgtaagtag |
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Protein
| Protein ID | pfu_aug2.0_1746.1_21770.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1746.1_21770.t1 MLKLSVTIQCCIIAILTHEIKVSSEGVDKPKNCAAADLGLSDIIQETIFLDDDRYMIDEVTFVCRLGKWEKEMPGPDHER NVKLKTYAVKRQKRSFFKSIVKGVGSIFKGVGKFIGGVLGALACIFGCRERDPPNSPPSVTCPENMMDIYALRGEESRVV TWETPTGHDNEDGSLAATLVQGAEPGSLFQRGTHTIIYSVTDSKAYTATCNFQIRVSVINCQPIPWPDNGYIYCGQVGFI WGTSCDVGCNDGFEISTGTSNNRQSVVCEKDPNNGGIYDIDIPTCSAIICNGDASELHPENGNAVCTHSNYKYDTSCFTS CDSGYSSSGLVTTTCQDDGTWSATLKGCQDSEPPTLSNCPGTLSVYADRGETSATLIWNAPMASDNSGNVTLEQTLGSPP GSVFEEGLHEIRYRAIDGRGNTSPDCIFFLQVERK |
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