Gene
| Gene Model ID | pfu_aug2.0_1749.1_31883 |
|---|---|
| Locus | scaffold1749.1 : 56097 ... 75425 : - |
| To GenomeBrowser | scaffold1749.1:56097..75425 |
| Genes list of scaffold | scaffold1749.1 |
| Synonym | pfu_aug1.0_359.1_43630 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1749.1_31883.t1 | 1 | 1 | zf-C3HC4 | 2 | 39 | 1.2e-07 | 31.1 | 2.9e-10 | 2.8e-07 | 30.0 |
| pfu_aug2.0_1749.1_31883.t1 | 1 | 1 | zf-C3HC4_4 | 2 | 39 | 8.4e-07 | 28.7 | 2.1e-09 | 2.1e-06 | 27.5 |
| pfu_aug2.0_1749.1_31883.t1 | 1 | 1 | zf-C3HC4_2 | 2 | 39 | 8.5e-07 | 28.9 | 2.2e-09 | 2.2e-06 | 27.5 |
| pfu_aug2.0_1749.1_31883.t1 | 2 | 1 | zf-TRAF | 35 | 87 | 4.2e-08 | 33.4 | 0.00058 | 0.58 | 10.5 |
| pfu_aug2.0_1749.1_31883.t1 | 2 | 2 | zf-TRAF | 68 | 121 | 4.2e-08 | 33.4 | 2.4e-10 | 2.4e-07 | 31.0 |
| pfu_aug2.0_1749.1_31883.t1 | 2 | 1 | MATH | 185 | 202 | 2.4e-27 | 95.5 | 9.6 | 9500.0 | -3.2 |
| pfu_aug2.0_1749.1_31883.t1 | 2 | 2 | MATH | 303 | 442 | 2.4e-27 | 95.5 | 6.6e-30 | 6.5e-27 | 94.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1749.1_31883.t1 | gi|578826091|ref|XP_006720307.1| | 0.0 | |
| pfu_aug2.0_1749.1_31883.t1 | gi|723578893|ref|XP_010309658.1| | PREDICTED: TNF receptor-associated factor 3 isoform X3 [Balearica regulorum gibbericeps] | 0.0 |
| pfu_aug2.0_1749.1_31883.t1 | gi|695150384|ref|XP_009502844.1| | PREDICTED: TNF receptor-associated factor 3 isoform X3 [Phalacrocorax carbo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1749.1_31883.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1749.1_31883.t1 atgtgtaaaatttgtaatgacatactgagagatgctgttcaaactttctgtggccatcgtttatgcttacagtgtattga tcaggccttgcaagggagagaatccattccatgccctgcaaaggaagagggatgtgtagatctgaaacgtgaagaaatca acagagactcaagcgcacgcagggaggtccgagctttggatgttttctgtccgtttgaagatggaggatgtaaaaagacc ctacaatggaaagacttacagttagaggcacatctcataacctgtccaaaaagaccacaacgatgtagatatcattctgt gggatgtacttttgagggaacaagtgaagaagttcaacaacatgagcgtgatgatactgacagacatcttgagcttatca ctatgtacacagccaatatggacttacaaagtctggaggtcagaagagaactacaggatatgtcattggaaagggataat tcaaggaggcttctagatgatgtatccagacagatggctgaaattaaacgttctatggatgacatgaaaattcaagtcag agatgtcaagctcaaaattgtaagtcaaactgaaaggattattcatgtggagaggaaggttgaggacttggctaagaagg actcagttgacagacatgctagggacttacaggtgatccgtgagactcaagctagcatgtcagagagaatacgtcagttg gaggggagagccccatcacagggtaatcctgcagtaccagcaatagagggcaatactggcagtgttgtcccacaagttca gcagcatgaaagacagcttggactacaagatatcagactggctgaactggatctaagattccaagtgttggaaacagcta gctatgatggcacgcttatctggaaaatcaaggactactcaaggagaaagcaagatgcaataacaggacgaactctatct ttgtacagccagcccttctatacaagcagaactggatataagatgtgtgcaagagtttaccttaacggggacggcatggg gagggggacacatctttccctgttctttgttataatgaggggagagtatgacaccctgttgtcatggccatttaaacaga aggtgaccttgatgttgttagaccaggacacaggtacccgacatctgtccgacacatttaggccggacccttcaagttca agcttccggaaacccacgacggagatgaatgtagcatctggatgtcctctctttgtaagccatgctgtactggaaacaag aacctacgtcagggaggataccatctttatcaaaattattgttgatactgagggtttgtatgaagacagcattttaaagg aaagaagaagctaa |
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Protein
| Protein ID | pfu_aug2.0_1749.1_31883.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1749.1_31883.t1 MCKICNDILRDAVQTFCGHRLCLQCIDQALQGRESIPCPAKEEGCVDLKREEINRDSSARREVRALDVFCPFEDGGCKKT LQWKDLQLEAHLITCPKRPQRCRYHSVGCTFEGTSEEVQQHERDDTDRHLELITMYTANMDLQSLEVRRELQDMSLERDN SRRLLDDVSRQMAEIKRSMDDMKIQVRDVKLKIVSQTERIIHVERKVEDLAKKDSVDRHARDLQVIRETQASMSERIRQL EGRAPSQGNPAVPAIEGNTGSVVPQVQQHERQLGLQDIRLAELDLRFQVLETASYDGTLIWKIKDYSRRKQDAITGRTLS LYSQPFYTSRTGYKMCARVYLNGDGMGRGTHLSLFFVIMRGEYDTLLSWPFKQKVTLMLLDQDTGTRHLSDTFRPDPSSS SFRKPTTEMNVASGCPLFVSHAVLETRTYVREDTIFIKIIVDTEGLYEDSILKERRS |
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