Gene
| Gene Model ID | pfu_aug2.0_175.1_17062 |
|---|---|
| Locus | scaffold175.1 : 247940 ... 265626 : - |
| To GenomeBrowser | scaffold175.1:247940..265626 |
| Genes list of scaffold | scaffold175.1 |
| Synonym | pfu_aug1.0_4960.1_30828 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rad18 | GO:0005488 GO:0005654 GO:0019985 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_175.1_17062.t1 | 1 | 1 | zf-RING_6 | 30 | 92 | 1.3e-06 | 28.0 | 2.4e-09 | 2.4e-06 | 27.2 |
| pfu_aug2.0_175.1_17062.t1 | 1 | 1 | zf-C3HC4 | 36 | 74 | 1.0e-05 | 25.1 | 3.0e-08 | 3.0e-05 | 23.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_175.1_17062.t1 | gi|543356025|ref|XP_005522278.1| | PREDICTED: E3 ubiquitin-protein ligase RAD18 [Pseudopodoces humilis] | 4.0e-17 |
| pfu_aug2.0_175.1_17062.t1 | gi|395516592|ref|XP_003762471.1| | 5.0e-17 | |
| pfu_aug2.0_175.1_17062.t1 | gi|71895379|ref|NP_001025774.1| | E3 ubiquitin-protein ligase RAD18 [Gallus gallus] | 2.0e-16 |
| pfu_aug2.0_175.1_17062.t1 | gi|530589739|ref|XP_005288551.1| | PREDICTED: E3 ubiquitin-protein ligase RAD18 isoform X1 [Chrysemys picta bellii] | 3.0e-16 |
| pfu_aug2.0_175.1_17062.t1 | gi|530589741|ref|XP_005288552.1| | PREDICTED: E3 ubiquitin-protein ligase RAD18 isoform X2 [Chrysemys picta bellii] | 3.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_175.1_17062.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_175.1_17062.t1 atgcttggaatcactcgattgtcctcgaaatatgtcgaaaattcaagtccaaatgactggccaagttctcacaacaattt taaggctgttgatgggctgcttcgatgtaagatttgcaatgatttcataacattagccgaaatgttgcagcattgctccc atacattctgttcttcctgcattcaccattggctgtcattacaaaatagctgtccatcctgtggtatagaagccaaggaa acagatctggtgtacaatagaattgtagatgagatcctgaaacatttccacagaataagattttcacttttgggcccagc tgacaaggagaatgacccaaatcagattgaaagtaaacagaagcttgaactgagatctccagaaaataagatgtgtaaaa ataactttgcgaagctgaagagtccttctcatctaataagaagtaatcagtcgaccagacatgtggatgaaggacttgtg aagcctggatttgacacagtgaagtcaatgacacctaataacaataataaagagaaatcaccaaaacaatttagtcgtag aataaggatggtcaagcatgatgagacttttacatccaatgagggcaaaggtcctttacaaggtcaaggtcacttattta gggtcatacagaatgcagagatatttgatcatgaaaaaaatataagcaagattttatctgaagaaacaatacaactggca gaccaagtgaggggaaagagagagagttcaaaggaaaataagttacggagactagctgaacagagtagtggaaatccaga aaaattgataggaagagaaccagatggtactaaaggggtacaagttacaccaaaggaagatgaacctcaagtacatgcag atagtgggaagaaagagagaagaggttctagatctggcaaaaggaaatcctgtttggaagtaaggaagggaaagatttct aagattagttcaagcgacactatgaaggcagaggaaaatgttgcagaaaatgatggtgacgatggtagtaagactgagaa actgcaggacaagacttattattcaaacatcagtgactttgcaacgtcttatgattcaaggtcggatagagatacccctg aattgctggaagacgcctcattacgttcaagtcaaacccaacctcagctagaatataaagtgatgtctgatgaagaacaa tacaaacaacattgtaagaaatatctaggaggtgaaatctcaacaaacattgtcacattcaagcaaacttctgagatgtc aacaagggaaaatctgatatgtcccactcttcctccttctcacaatggacttgagcagactgatccagtattctctctgg aaaccaacacagatacctgtcaggagatgtctgacagaatacctggaactccagtctctgagagaaataactgtaataat tatacatcaggcccacatgttgatctcaggaattttgattcaccctcgccaatagttagagtagataaatacctggagag agtaggtgtcagctcctcaggaagtgttactccaacaaggaacggtaattactcctttccgttagtgagtcagtcctcac catttaccttcgtccaccaggcaggaagtataggattggatggtgaacctacagaaataggggacagtgatacagaggac gtattgacggaaataaacaagtctataggaagagaaccagatggcactaaaggggtacaacttacaccaaaggaagatga acctcaagtacatgcagatagtgggaagaaagagagaagagggtctagatctggcaaaaggaaatcctgtttggaagtaa gaaagggaaagatttctaagattagtacatgcgacactctgaaggcagaggaaaatgtagcagaaaatgatggtgacaat ggtagtaagactgagaaactgaaggacaagactaattattcaaacatcagtgactttgcaacgtgttatgattcaaggtc ggatagagatacccctgaattgctggaagacgcctcattacgttcaagtcaaactcagcctcagctagaatataaagtga tgtctgatgaagaacaatacaaacaacattgtaagaagtatctaggaggtgaaatctcaacaaacattgtcacattcaag caaacttctgagatgttaacgagggaaaatctgatatgtcccactcttcctccttctcacaatgaccttgaacagactga tctagtatactctctggaaactaacacagacacctgtcaggagatgtctgacagaatacctcgaactccagtctctgaga gaaataactgtaataattatacatcaggcccgcatgttgatctcaggaattttgattccccctcaccgatagttagagta gataaatacctggagagagtaggtgtcagctcctcaggaaatgctactccaacaaggaacggcaattactccttcccgtt agtgagtcagtcctcgccatttaccttcgtccaccaggcaggaagtataggattggatggtgaacctacagaaacgggag acagtgatacagaggacgtattgacggaaataaacaagtctatagctgagtttgatgcagaggctgtagtagacctcagt gttgacaacaacagtttactattggattaccaggatatgtggccagcactctcccttatgtcatctgcagtcagctctag ccagcagtcctgtgggaatgatgatgaatgtggtagaacgcggagggaatcagagctgtctgaatccgggagtgatctgt caggagccagcgagatgtcagatatcatacctctgtctcaggatttgcagaactcacagagttgtgatctagaaaatgag tgtccgtctgtgcaaaaacaagaaaatgattttgtgaagaaatcagaaaaattgagaacaaggccaacagctagatctaa aagctgtaaaagattacggtccttctccctggagaaaagggcttctaaaagactaaaaaccgtccactga |
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Protein
| Protein ID | pfu_aug2.0_175.1_17062.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_175.1_17062.t1 MLGITRLSSKYVENSSPNDWPSSHNNFKAVDGLLRCKICNDFITLAEMLQHCSHTFCSSCIHHWLSLQNSCPSCGIEAKE TDLVYNRIVDEILKHFHRIRFSLLGPADKENDPNQIESKQKLELRSPENKMCKNNFAKLKSPSHLIRSNQSTRHVDEGLV KPGFDTVKSMTPNNNNKEKSPKQFSRRIRMVKHDETFTSNEGKGPLQGQGHLFRVIQNAEIFDHEKNISKILSEETIQLA DQVRGKRESSKENKLRRLAEQSSGNPEKLIGREPDGTKGVQVTPKEDEPQVHADSGKKERRGSRSGKRKSCLEVRKGKIS KISSSDTMKAEENVAENDGDDGSKTEKLQDKTYYSNISDFATSYDSRSDRDTPELLEDASLRSSQTQPQLEYKVMSDEEQ YKQHCKKYLGGEISTNIVTFKQTSEMSTRENLICPTLPPSHNGLEQTDPVFSLETNTDTCQEMSDRIPGTPVSERNNCNN YTSGPHVDLRNFDSPSPIVRVDKYLERVGVSSSGSVTPTRNGNYSFPLVSQSSPFTFVHQAGSIGLDGEPTEIGDSDTED VLTEINKSIGREPDGTKGVQLTPKEDEPQVHADSGKKERRGSRSGKRKSCLEVRKGKISKISTCDTLKAEENVAENDGDN GSKTEKLKDKTNYSNISDFATCYDSRSDRDTPELLEDASLRSSQTQPQLEYKVMSDEEQYKQHCKKYLGGEISTNIVTFK QTSEMLTRENLICPTLPPSHNDLEQTDLVYSLETNTDTCQEMSDRIPRTPVSERNNCNNYTSGPHVDLRNFDSPSPIVRV DKYLERVGVSSSGNATPTRNGNYSFPLVSQSSPFTFVHQAGSIGLDGEPTETGDSDTEDVLTEINKSIAEFDAEAVVDLS VDNNSLLLDYQDMWPALSLMSSAVSSSQQSCGNDDECGRTRRESELSESGSDLSGASEMSDIIPLSQDLQNSQSCDLENE CPSVQKQENDFVKKSEKLRTRPTARSKSCKRLRSFSLEKRASKRLKTVH |
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