Gene
| Gene Model ID | pfu_aug2.0_1750.1_01810 |
|---|---|
| Locus | scaffold1750.1 : 101516 ... 134865 : + |
| To GenomeBrowser | scaffold1750.1:101516..134865 |
| Genes list of scaffold | scaffold1750.1 |
| Synonym | pfu_aug1.0_678.1_36649 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| von willebrand factor type egf and pentraxin domain-containing protein 1 | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1750.1_01810.t1 | 2 | 1 | HYR | 18 | 48 | 2.1e-08 | 34.0 | 1.6e-06 | 0.004 | 17.1 |
| pfu_aug2.0_1750.1_01810.t1 | 2 | 2 | HYR | 112 | 156 | 2.1e-08 | 34.0 | 2.0e-05 | 0.05 | 13.6 |
| pfu_aug2.0_1750.1_01810.t1 | 5 | 1 | TSP_1 | 501 | 512 | 1.4e-12 | 47.5 | 3.7 | 9200.0 | -3.2 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 1 | GCC2_GCC3 | 547 | 594 | 1.2e-30 | 104.7 | 2.9e-15 | 7.2e-12 | 44.6 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 2 | GCC2_GCC3 | 601 | 648 | 1.2e-30 | 104.7 | 3.9e-10 | 9.6e-07 | 28.2 |
| pfu_aug2.0_1750.1_01810.t1 | 5 | 2 | TSP_1 | 655 | 706 | 1.4e-12 | 47.5 | 5.5e-16 | 1.4e-12 | 47.5 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 3 | GCC2_GCC3 | 767 | 779 | 1.2e-30 | 104.7 | 0.011 | 27.0 | 4.4 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 4 | GCC2_GCC3 | 774 | 819 | 1.2e-30 | 104.7 | 8.5e-14 | 2.1e-10 | 40.0 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 5 | GCC2_GCC3 | 822 | 843 | 1.2e-30 | 104.7 | 0.0046 | 11.0 | 5.6 |
| pfu_aug2.0_1750.1_01810.t1 | 5 | 3 | TSP_1 | 837 | 837 | 1.4e-12 | 47.5 | 6.0 | 15000.0 | -11.2 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 6 | GCC2_GCC3 | 863 | 882 | 1.2e-30 | 104.7 | 0.021 | 53.0 | 3.5 |
| pfu_aug2.0_1750.1_01810.t1 | 5 | 4 | TSP_1 | 865 | 865 | 1.4e-12 | 47.5 | 6.0 | 15000.0 | -9.5 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 7 | GCC2_GCC3 | 888 | 904 | 1.2e-30 | 104.7 | 0.023 | 56.0 | 3.4 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 8 | GCC2_GCC3 | 907 | 926 | 1.2e-30 | 104.7 | 7.2e-05 | 0.18 | 11.4 |
| pfu_aug2.0_1750.1_01810.t1 | 5 | 5 | TSP_1 | 908 | 930 | 1.4e-12 | 47.5 | 2.7 | 6700.0 | -2.7 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 9 | GCC2_GCC3 | 930 | 965 | 1.2e-30 | 104.7 | 0.0018 | 4.5 | 6.9 |
| pfu_aug2.0_1750.1_01810.t1 | 10 | 10 | GCC2_GCC3 | 969 | 987 | 1.2e-30 | 104.7 | 0.0073 | 18.0 | 5.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1750.1_01810.t1 | gi|676428526|ref|XP_009045304.1| | hypothetical protein LOTGIDRAFT_230169 [Lottia gigantea] | 5.0e-16 |
| pfu_aug2.0_1750.1_01810.t1 | gi|585661686|ref|XP_006816606.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Saccoglossus kowalevskii] | 9.0e-15 |
| pfu_aug2.0_1750.1_01810.t1 | gi|597743154|ref|XP_007233667.1| | PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 1-like [Astyanax mexicanus] | 2.0e-14 |
| pfu_aug2.0_1750.1_01810.t1 | gi|700429296|ref|XP_009953325.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, partial [Leptosomus discolor] | 5.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_1750.1_01810.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1750.1_01810.t1 atgtatttccctgcctctctggggaaaagcccatcaagatctggaaagggaccaggaaaacatttctgggggacaactat cacatattaccatgccagagacaaagctggaaatatgagtagctgctcgttcaaaattgtagttgacattatcaaatgcc caagtctgagccctgtaagggatggatacttgatatgccactcaggaggagattaccgttatggttctacctgcaacttt gggtgttatgagggacatgaaattatttgggatcgtttcttagaatgtttgcaaactggacagtggtcagctgctatacc atactgcaagaatatagaacccccggtgatttcacagtgtgagaaggtagtgtacaactttgccgacagaaattcaacaa gtggaacagctatctggtcagaacctatagttactgacaaccacgacttggcagtaacaatacgaaaaatagggagcatt aacataggggacaatgtacagagcggatccggtgatgcgcgtgaatcgcaaagttggacttctagtaactttatatctga cgaccgagatccaaagtctaaaacctcggaatctgatttggctgacacgtttaacttgttcaaaacgtatcttgactcgt cgttgaaaacattcaaagccgatattcttgagtctgaagatagtaaagtatctgacatttctcgtaaagtccgtaaggag attttgtccgcttcactcaagtcggaaggaaataaaattcaatttgaatttaatgaagatattcttcttgatctcgagaa attggagaagcattgcgcaaaggtcaaggacgtccagttatccgattgtataaagaatattcgtgataaattgaataaac gcaacaaacttattcgcatagcagacagttcacctgctggctgggcgacagttcgtcagtacgaatctaatgaaatcgct tcggactctgacgatgagaaaaagctccgacaggctgagaatcgtgctctcaagagtatcaaggaaaagcgacgtcctaa gccttatgacaatcctcgtggcgatagccgtaatcatccttctgccgctgcaggaagcgccgaacaacttagatctggat tccagtttcgcgatcagcagctttttcgtccccgcagacaagccacacctttcgacatgtgctacgcctgcagaggattc ggccattggcgcaaggattgcccagtcatcaagtcagtcgacaatcaggccaaaccagtcaacgcagcaaatctcagatc tggtggtgctactacagccgccaattctgtagtgagtgatcgtttattcaagacacacggaaggtgggtgtccgaaaatt ccaaagacgggtatgttcatgagaacttagttgaaaaattgtctgtctctaaaaaattagctacagagatgtgtaaaacg attccaaatgccccgaagaacggtgcactggcatgtgataactggcttggtggaaagttctgtcaaatgctatgtaaaga aggctatgacgtgcgcccaggatcgaatcattacgacatgcttgtttgtgataacaacggggagtggttaccacatgatt cattgccattggcaaactgtgcaattgaatgcgcggagggatcttatctatcgtccgaagaaatccagtgtatccaatgt cctcgaggtacttaccaacctgatgacagccaggaggaatttctgccatgtccctatgggaagaccactgataccatagg agcttcgtcaatatcaaattgtaaagatggttgtgagccaggtacatggtcaacaaatggcctaccaccatgctcgctct gccctattggcacattctctagtatctacggttctgatggatgtacttcatgtaacggctctaaaacaactgttgcagaa ggcggaactgatgaggcgatttgtcaagttgatggccagtggagcacctggaacgagtggtcagtttgttcagtaacttg tggaaacggcacaaagacaaggacacgtctgtgcaataacccaactccggacaatggaggacgctattgtgaagggaacg atacagatttcacaacctgcaacgatactgaactatgtccagatggcacggaagcttgttacacagctttgaatctggca atacaggacctaaacaaccacgtggacaacaatacatttgatgtcgtagtccaagggatattgtacgaggttgatcctga tgatactgtgatcaacggagtagtttcttgtcccatcggatatacacagattagatattattgtgtgccatgctcactgg gaacttatttgacaaatgacgagtgtgagagatgtgactacggtacataccaggaccagactggtcagacatcctgcaat tcatgtccagccggtaaaacgacaggtggtacaggatctattagtcaacaggaatgtacaggtacatgtaagtcatatcc agagggtacagcgacagctggtacaggatctattagtcaacaggaatgtacaggtaagtcatgtcgagacggtacaaaga cagctggtacatgctctattagtcaacaggaatgtacagcaggtacaacgacagctggtacaggatctatgagtcaacag gaatgtacaggtaagtcatatccagacggtacaaagacagctggtacaggatctattagtcaacaggaatgtacaggtaa atcatgtccagacggtacaacaacagctggtacaggatctattagtcaacaggaatgtacaggtaagtcgtgtccagatg gtacaacgacagctggtacaggatttatcagtcaacaggaatgtacaaacggtacaatgacagctggtacaggatctatt agtcaacatgaatgtacaggtaagtcatgtcaagacggtaaaacgacagctggtacaggatatattagtcagcaggaatg tacag |
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Protein
| Protein ID | pfu_aug2.0_1750.1_01810.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1750.1_01810.t1 MYFPASLGKSPSRSGKGPGKHFWGTTITYYHARDKAGNMSSCSFKIVVDIIKCPSLSPVRDGYLICHSGGDYRYGSTCNF GCYEGHEIIWDRFLECLQTGQWSAAIPYCKNIEPPVISQCEKVVYNFADRNSTSGTAIWSEPIVTDNHDLAVTIRKIGSI NIGDNVQSGSGDARESQSWTSSNFISDDRDPKSKTSESDLADTFNLFKTYLDSSLKTFKADILESEDSKVSDISRKVRKE ILSASLKSEGNKIQFEFNEDILLDLEKLEKHCAKVKDVQLSDCIKNIRDKLNKRNKLIRIADSSPAGWATVRQYESNEIA SDSDDEKKLRQAENRALKSIKEKRRPKPYDNPRGDSRNHPSAAAGSAEQLRSGFQFRDQQLFRPRRQATPFDMCYACRGF GHWRKDCPVIKSVDNQAKPVNAANLRSGGATTAANSVVSDRLFKTHGRWVSENSKDGYVHENLVEKLSVSKKLATEMCKT IPNAPKNGALACDNWLGGKFCQMLCKEGYDVRPGSNHYDMLVCDNNGEWLPHDSLPLANCAIECAEGSYLSSEEIQCIQC PRGTYQPDDSQEEFLPCPYGKTTDTIGASSISNCKDGCEPGTWSTNGLPPCSLCPIGTFSSIYGSDGCTSCNGSKTTVAE GGTDEAICQVDGQWSTWNEWSVCSVTCGNGTKTRTRLCNNPTPDNGGRYCEGNDTDFTTCNDTELCPDGTEACYTALNLA IQDLNNHVDNNTFDVVVQGILYEVDPDDTVINGVVSCPIGYTQIRYYCVPCSLGTYLTNDECERCDYGTYQDQTGQTSCN SCPAGKTTGGTGSISQQECTGTCKSYPEGTATAGTGSISQQECTGKSCRDGTKTAGTCSISQQECTAGTTTAGTGSMSQQ ECTGKSYPDGTKTAGTGSISQQECTGKSCPDGTTTAGTGSISQQECTGKSCPDGTTTAGTGFISQQECTNGTMTAGTGSI SQHECTGKSCQDGKTTAGTGYISQQECT |
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