Gene
| Gene Model ID | pfu_aug2.0_1752.1_08557 |
|---|---|
| Locus | scaffold1752.1 : 34581 ... 46615 : - |
| To GenomeBrowser | scaffold1752.1:34581..46615 |
| Genes list of scaffold | scaffold1752.1 |
| Synonym | pfu_aug1.0_1814.1_00855 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor syf1 | GO:0006283 GO:0006351 GO:0006397 GO:0016020 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1752.1_08557.t1 | 4 | 1 | TPR_19 | 60 | 80 | 4.6e-06 | 26.8 | 0.69 | 850.0 | 0.3 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 1 | TPR_14 | 61 | 81 | 7.1e-08 | 32.4 | 0.29 | 360.0 | 2.2 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 2 | TPR_19 | 112 | 143 | 4.6e-06 | 26.8 | 0.039 | 48.0 | 4.3 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 2 | TPR_14 | 114 | 153 | 7.1e-08 | 32.4 | 0.051 | 63.0 | 4.6 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 3 | TPR_14 | 164 | 188 | 7.1e-08 | 32.4 | 0.075 | 93.0 | 4.0 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 3 | TPR_19 | 168 | 211 | 4.6e-06 | 26.8 | 0.0047 | 5.9 | 7.3 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 4 | TPR_19 | 261 | 287 | 4.6e-06 | 26.8 | 0.0025 | 3.1 | 8.2 |
| pfu_aug2.0_1752.1_08557.t1 | 4 | 4 | TPR_14 | 263 | 289 | 7.1e-08 | 32.4 | 1.4e-05 | 0.018 | 15.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1752.1_08557.t1 | gi|557016452|ref|XP_006008659.1| | PREDICTED: pre-mRNA-splicing factor SYF1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1752.1_08557.t1 | gi|410902645|ref|XP_003964804.1| | PREDICTED: pre-mRNA-splicing factor SYF1 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_1752.1_08557.t1 | gi|348509202|ref|XP_003442140.1| | PREDICTED: pre-mRNA-splicing factor SYF1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_1752.1_08557.t1 | gi|530653119|ref|XP_005312815.1| | PREDICTED: pre-mRNA-splicing factor SYF1 isoform X1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1752.1_08557.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1752.1_08557.t1 atggtgatcatgcctgaagcaaaaacccaagaagaaagtacctctcagaaagacatatactttgaggaaaatgacctacc ttatgaggaagaaatcttaagaaatccttactccgttaagtcttggttgaggtatatagagttcaagaaagatgctccaa gaaatgtcgtcaatctgatatacgagcgagccctgaaagaactgcccggcagttataagttatggtataactacctgagg ttacgacgcaggcaggtcaaaggtcgatgtatcaatgacccagccattgaagatgtcaataatgcccatgaaagagctct tgttttcatgcacaagatgccaaggatctggctggactattgtcagtttctagtggaccagagtaaaatcaccaagacaa gacgaacgtttgaccgcgcccttcgtgctctacccattacacagcatcacagaatatggccattgtatctgaagtttgcc agactttacgacctgccagaaacagccgtcagaatctacagacgccatcttaagcttcaaaaagaaaacacagaggagta cattgaatacttgatgaagataggatggttagatgaagcggcaaatcgacttactgacatcataaacgacgataattttg tttcaaaggagggcaagtcaaaacatcagctttggaatgaattatgtgaacttattgccaagaatccagacaaggtaacg agtatgaacatcgagccgatcatacgtcagggattaaaacggtacacagaccagataggcgtcttatggatctctatggc tgattattatgtcaggggaggccactttgacagggcgcgggacatatacgaggaagccattcagactgttataactgtgc gagactttacacaagtgtttgatgcctacgcccagtgtgagaaaaaccttataagtgctaagatggagactgtagaagag ctgggtccatcagaagaagatgaccttgatatagagctaagattggcaaggttagaagatctcatggataggagacctct actccttaatagtgtattactcagacagaatcctcataatgtccatgaatggcataaaagagtcaagttgtttgagggca agcctagagagtactcctttagtcgtaacagaaaataccattcttttggctgtgcgtcagctaagttagaaataggatgg aaaagaaaaagtctacggggattttttataataaaatcgctgaaaatgtgtgacgtcggaggctttgacgtcactgttta ctattactattgttga |
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Protein
| Protein ID | pfu_aug2.0_1752.1_08557.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1752.1_08557.t1 MVIMPEAKTQEESTSQKDIYFEENDLPYEEEILRNPYSVKSWLRYIEFKKDAPRNVVNLIYERALKELPGSYKLWYNYLR LRRRQVKGRCINDPAIEDVNNAHERALVFMHKMPRIWLDYCQFLVDQSKITKTRRTFDRALRALPITQHHRIWPLYLKFA RLYDLPETAVRIYRRHLKLQKENTEEYIEYLMKIGWLDEAANRLTDIINDDNFVSKEGKSKHQLWNELCELIAKNPDKVT SMNIEPIIRQGLKRYTDQIGVLWISMADYYVRGGHFDRARDIYEEAIQTVITVRDFTQVFDAYAQCEKNLISAKMETVEE LGPSEEDDLDIELRLARLEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVKLFEGKPREYSFSRNRKYHSFGCASAKLEIGW KRKSLRGFFIIKSLKMCDVGGFDVTVYYYYC |
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