Gene
| Gene Model ID | pfu_aug2.0_1770.1_01828 |
|---|---|
| Locus | scaffold1770.1 : 115891 ... 133896 : - |
| To GenomeBrowser | scaffold1770.1:115891..133896 |
| Genes list of scaffold | scaffold1770.1 |
| Synonym | pfu_aug1.0_13716.1_46668 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1770.1_01828.t1 | 2 | 1 | Cast | 8 | 309 | 0.0 | 168.5 | 4.3e-29 | 2.1e-25 | 88.9 |
| pfu_aug2.0_1770.1_01828.t1 | 2 | 2 | Cast | 279 | 590 | 0.0 | 168.5 | 6.2e-26 | 3.1e-22 | 78.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1770.1_01828.t1 | gi|524894348|ref|XP_005103673.1| | PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1770.1_01828.t1 | gi|524894346|ref|XP_005103672.1| | PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1770.1_01828.t1 | gi|632961340|ref|XP_007896704.1| | PREDICTED: ELKS/Rab6-interacting/CAST family member 1 isoform X5 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1770.1_01828.t1 | gi|632961334|ref|XP_007896700.1| | PREDICTED: ELKS/Rab6-interacting/CAST family member 1 isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1770.1_01828.t1 | gi|699639721|ref|XP_009877930.1| | PREDICTED: ELKS/Rab6-interacting/CAST family member 1 [Charadrius vociferus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1770.1_01828.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1770.1_01828.t1 aaacagtccacaacaattcgagaattggaagcacaagtatctttcggggaggatgaacaggccagtagtcagatctcccg acaggagattgaaattctccagcgggagaaggacaaacaagcaaaagaaattctcatattgcggagaacagtggacgaaa tggaccttagaattagtactcaaaaacagacgttagcagcaagggacgaaagtatgaagaaattgctagaaatgttgcaa aacaagggccattctgtgaaaggtatggaagaaaatagggcagaaatagagcagctcctgacacagaaactagaagacga acggaaaattaaacagctacagaatgaggtcaatcaaaaagaatcagaatgttcaacattgaaagaggctcattggtgtt tttgtatattggagcaggatggaaacagattgttggaggaactggaacaaatcaagttacaactcaaacaacaacctgcc agtgtccatacaatgcaggcaatgcttgaagcaaaggactcgaggatttcagctttagagaaggaagttcaaggtctgga ggataggctattaaaatcacaaggtgatggagatagcttgaaaaaggatgggagcttaaaagacagtctgtcaaacaaag aaaagcatttgaaagcagagataatagatttgaagaaagagatatccaacaaagatacagaattagccggtcttaaactg aaagcagaaacatcagagaaacaacagacggagcatcagcaatacatcacggtactcaaagaccagataacggctaaaga gagtcacaacaccatgctacaagcagagacagagctatgtgagttaagggagactgccacggaggctagcagtgagaagt tccagacagactccaaagtcagacagttagaaagagaagtggaagacaaggtggcacagcttgataaggctaatactgaa ctggcagagatgaagaaagaactagaagaaaacaaggtagccactaattctgaggatgtagagaagcagctgagtgaact gactggtcaaattgaccaggctcgtaatgagaccaataaagtacaagccgaagtggacagactactcactatcatgaagg attcggaaaacgagaaaaatgagaaagacgcacagatgaaagaaatgcaggaaaccatcaaagagtataaacaaaaaatg ggaaccttaaagagaagtcagcagttggagaaaaagaaaaacgcacacctgctggaagaagctcgtaaaagggagggtga tctaagtgaagatgcttcacaattaaaggatgctgtaatagccaagggagatagaatagaggagcttgaggaggcactga aagaaagtgtgcggataacagcagagagagaaatggtgatggcggatcagcagaaacaattagaggaagcggaacaaaag gctgatgacctgacaatggagctggtgaagatgaagacgacattatcagaccagacctttaaggtgacgaacatgaccaa acagctggaagagaaggaccagaaacttaaacgactgcagtcagagagacatcgacacctagaggaagtctttgaaatga aacaagaagccattcaagctgcaatctgtgagaaggacgctaatatagcattgttagaaatgactagtacaaaacagcgg aaaaatacggaagaaatagacaaactcagcaaagagaaagaaaagcttcacagtcaattaaaagatgtgacacaaaacag aatgcgactgatacacaaacaggagaggtatgcaggatctctgggaaggaacaagaaaaccatgacggagagaatgaagg gaacctcgcccgatcgtgtagacccatacgtattgactgctccttcttcactagaatcctga |
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Protein
| Protein ID | pfu_aug2.0_1770.1_01828.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1770.1_01828.t1 KQSTTIRELEAQVSFGEDEQASSQISRQEIEILQREKDKQAKEILILRRTVDEMDLRISTQKQTLAARDESMKKLLEMLQ NKGHSVKGMEENRAEIEQLLTQKLEDERKIKQLQNEVNQKESECSTLKEAHWCFCILEQDGNRLLEELEQIKLQLKQQPA SVHTMQAMLEAKDSRISALEKEVQGLEDRLLKSQGDGDSLKKDGSLKDSLSNKEKHLKAEIIDLKKEISNKDTELAGLKL KAETSEKQQTEHQQYITVLKDQITAKESHNTMLQAETELCELRETATEASSEKFQTDSKVRQLEREVEDKVAQLDKANTE LAEMKKELEENKVATNSEDVEKQLSELTGQIDQARNETNKVQAEVDRLLTIMKDSENEKNEKDAQMKEMQETIKEYKQKM GTLKRSQQLEKKKNAHLLEEARKREGDLSEDASQLKDAVIAKGDRIEELEEALKESVRITAEREMVMADQQKQLEEAEQK ADDLTMELVKMKTTLSDQTFKVTNMTKQLEEKDQKLKRLQSERHRHLEEVFEMKQEAIQAAICEKDANIALLEMTSTKQR KNTEEIDKLSKEKEKLHSQLKDVTQNRMRLIHKQERYAGSLGRNKKTMTERMKGTSPDRVDPYVLTAPSSLES |
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