Gene
| Gene Model ID | pfu_aug2.0_1777.1_25140 |
|---|---|
| Locus | scaffold1777.1 : 2016 ... 18630 : + |
| To GenomeBrowser | scaffold1777.1:2016..18630 |
| Genes list of scaffold | scaffold1777.1 |
| Synonym | pfu_aug1.0_115.1_07386 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | PA | 94 | 157 | 2.8e-06 | 26.9 | 7.0e-09 | 6.1e-06 | 25.8 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-rbx1 | 236 | 282 | 2.4e-08 | 33.9 | 2.8e-11 | 2.4e-08 | 33.9 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-RING_2 | 238 | 282 | 5.9e-16 | 58.0 | 1.3e-18 | 1.1e-15 | 57.1 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-C3HC4_3 | 238 | 285 | 7.7e-06 | 25.4 | 1.6e-08 | 1.4e-05 | 24.6 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-C3HC4 | 240 | 281 | 2.1e-08 | 33.6 | 4.5e-11 | 3.9e-08 | 32.7 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-C3HC4_2 | 240 | 281 | 5.1e-07 | 29.6 | 1.1e-09 | 9.3e-07 | 28.7 |
| pfu_aug2.0_1777.1_25140.t1 | 1 | 1 | zf-RING_5 | 240 | 283 | 3.3e-06 | 26.7 | 6.8e-09 | 6.0e-06 | 25.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1777.1_25140.t1 | gi|524897722|ref|XP_005105318.1| | PREDICTED: E3 ubiquitin-protein ligase RNF13-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1777.1_25140.t1 | gi|676444798|ref|XP_009050546.1| | hypothetical protein LOTGIDRAFT_114185 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1777.1_25140.t1 | gi|602650308|ref|XP_007431550.1| | PREDICTED: E3 ubiquitin-protein ligase RNF13 [Python bivittatus] | 0.0 |
| pfu_aug2.0_1777.1_25140.t1 | gi|675614490|ref|XP_008936088.1| | PREDICTED: E3 ubiquitin-protein ligase RNF13 [Merops nubicus] | 0.0 |
| pfu_aug2.0_1777.1_25140.t1 | gi|731218614|ref|XP_010623598.1| | PREDICTED: E3 ubiquitin-protein ligase RNF13 [Fukomys damarensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1777.1_25140.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1777.1_25140.t1 atgccttattactgtcctataccacgccatgtaacaggactttatttgtttacggtactgaaccttctggccctcttcca tgtgtcgtttgtcagtggggatgtggaggtgatcagtaagagggataatgccactgtgaatagctttcaggatgccagag cagaatttggccgagctatcccagagaatggaattaatggttatttggtactggtgaagccacaaaatgatacgccatgt gataactattacccaggacctccccaaaacttgtcaatgggctggattgccttaataaggagaaatggatgtaaatttga gattatggttaagaaagcaggtgagcttggttatcaagccgtcatagtgtataataacgatcagcaggataaactggaga atatgggaggcacacttcgtgatgttgtaccatcagttttcattgcatggacagatgggaatttactcaggaaaaatttc ctatatgaacaaactaaagagtattatatacggatagaaaggaatacatattattacaagccttacatgctctggccgtt tgcagttgttgtgggtacctgtttctttcttatgttattatttatgattttcaaatggataagagatataagaaaaagac gaaagtcaaggttgtcaacaaaacatcttaaaaagataccaacaaaaaaattcaagaaaggggattcctacgatgtttgt gccatatgcctcgatgattttgaacaaggagataaactaagagtgttgccctgttcacatgcctaccattgcaagtgcat tgatccctggctgacaaaacgtaagaagacgtgtccagtttgtaagaggaaggttattccgggagccaatccggactcgg actcagatactgacgagtcaggaacggaagaaacaaatgaaagaacaccactcttggctgggaacaacaacaatcctgtg atggagactccaaggagatcaacatttgacaactcgggtttacctgagactgtccgggaacagcaggtgtctgtaatacg tgtaactacacagaacaatgactctgactccagcagtgatgaagaggacatcacacagagaggcgtggccggccccaccc taggagctgtggctggacccagtcatgtagatactaactctgacgttgttagaggagcagagggagggttggagaaccag ggttacacagacgctgaggaggaggaatgtgttgatgatagggatgttaaggttgtggtacccaacaacctcaaagcaaa caatgaattacatgatatcaaccacgtagtatga |
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Protein
| Protein ID | pfu_aug2.0_1777.1_25140.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1777.1_25140.t1 MPYYCPIPRHVTGLYLFTVLNLLALFHVSFVSGDVEVISKRDNATVNSFQDARAEFGRAIPENGINGYLVLVKPQNDTPC DNYYPGPPQNLSMGWIALIRRNGCKFEIMVKKAGELGYQAVIVYNNDQQDKLENMGGTLRDVVPSVFIAWTDGNLLRKNF LYEQTKEYYIRIERNTYYYKPYMLWPFAVVVGTCFFLMLLFMIFKWIRDIRKRRKSRLSTKHLKKIPTKKFKKGDSYDVC AICLDDFEQGDKLRVLPCSHAYHCKCIDPWLTKRKKTCPVCKRKVIPGANPDSDSDTDESGTEETNERTPLLAGNNNNPV METPRRSTFDNSGLPETVREQQVSVIRVTTQNNDSDSSSDEEDITQRGVAGPTLGAVAGPSHVDTNSDVVRGAEGGLENQ GYTDAEEEECVDDRDVKVVVPNNLKANNELHDINHVV |
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