Gene
| Gene Model ID | pfu_aug2.0_1777.1_25142 |
|---|---|
| Locus | scaffold1777.1 : 29877 ... 51605 : - |
| To GenomeBrowser | scaffold1777.1:29877..51605 |
| Genes list of scaffold | scaffold1777.1 |
| Synonym | pfu_aug1.0_3931.1_52136 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rab gdp gtp exchange | GO:0005085 GO:0005938 GO:0006897 GO:0007298 GO:0016829 GO:0017016 GO:0019901 GO:0030139 GO:0030971 GO:0035556 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1777.1_25142.t1 | 1 | 1 | VPS9 | 1221 | 1324 | 1.4e-20 | 73.2 | 6.2e-24 | 3.1e-20 | 72.1 |
| pfu_aug2.0_1777.1_25142.t1 | 1 | 1 | RA | 1346 | 1434 | 1.2e-11 | 44.9 | 8.5e-15 | 4.2e-11 | 43.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1777.1_25142.t1 | gi|242012503|ref|XP_002426972.1| | RAB GDP/GTP exchange factor, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_1777.1_25142.t1 | gi|641668057|ref|XP_008184313.1| | PREDICTED: protein sprint isoform X5 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1777.1_25142.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1777.1_25142.t1 atggagggtcaagtgtcgccggagttagacgatcaacaacagtctaactaccataagctaaatttacataggctggaatt agtgctgatgctgaacaacatagccagtgaccttgacctattactgcatgacctctgccacatatatccacgcccagatc aagccagcggctcaagatttcaaacttttgggaaaggacagtattgtgacagcagccctggggtgggggaggacagcgcc tttggcactctggcgtccactgatagctacgcctgtgaacagaagcttcggagcgactcgctacagtctggtcatctaga cgtgtttgggctggaggaaacggggctgcagattccagtataccctgacatctctaacagtgaccccatctcagagtcca gagctatcaacttcgaagagagactgacaaagactcattcaatatggaactccagtcagcccagcacgatggcattgtcg gcacagttcccggagaaaggtcgtgcgaatgtggatcactacctgatacagcacacagaccagggctacagggttcaggg atcgttacactacttcaactccataccaaatctgatcgtgtattatcatgaaaatacagaggaactgccgtaccgactgc tgctgccacctaccattaggagggcgaaaacattacaggaacttacgtcactgtcatatttaggtcaagatttttggaca tcttatcgatttgacagaggggttttaggatacagcaattttgagaatcgaaacctacacaaatcaacaagtgagcccgt gaacatcactcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnncatctcacttccacggtacaactccgcagattgcacgcatcatgccgtcaaagtccatgcagcaatttgc ctcagaatctcccttttcgtccagtgccgcatctacactggaaaaatctagtccttcctttcacagtctgaatgaaagtg ccagtagtagtgaaagaaatctagtgacattttctgccagtccaggaaaggaaaataacatagaccaaaatgtgacaagt gatagtacgtgctgcaagtgtaaatctaaaatttcatctactcaaactcgttctcaggatagcttaccgtcatcagcaaa ttcaagtgagagatcaaggtcggtggaaaggacgatgcccaatacacatcctcggacgccttctaaacataattcaaatt tatacttcaccacgtctattgaattgctcaataattcagagaatcaatattttcacagtaatctatcggacaaaatgagt gactatgaggatatatggaaacattcagcctctgctacccctgtgccatcagtcaaacttcctcctatgagaactttctc tactcaagctagtgaaaatgacgcttatgaaagtccgcctgaaaagaaacctgttgaacctatttacagcaaaccagata aaagtgcaatgaacaacaaaggtagcaaaaaagatctcaatactagagtgcagaaaagtgtagaaacaactcacaatgat ttaagtggaaatgatgtgtcacaaaacgagcccaatagtttacaagggaatactgtctcaaaagaagaggaattaagtga gaatgtaaagtgcaatttgcgtagaacgctaagtttggatgattacaaaattaaaaatgcgaaacgttcagattctgtgg agaccaaacttactgaagcgaagtcgacggcatctgtacacactcaaactagtcctaagatgaggaacaaacctggccct atacctccagtagataatgacgcatcatccacatctacggcattgtcctctgtcaaaagtcctgtgtatgcggaaccttt tgatagtttagtaccgccgaaggaaaaaagtaaaaagtctaaaattagacggagatcagctccatcaatgggatttagtg ctcgtaaagccaaaggagtgtcacaaacaccagctctagagacaatcttctcaccaaattttgaccatagtctatcacta catgagtctttcaattttaaacagatagataatcattcttgtgctatgatggatagtttaccacctagtggactgagacg aactcagagtgccaaatcgagactgagacacagcgagacggcacctgtactaaatagggacagtctcaatgaagtggtgc agaaactagagaaacttagtgttcagagagataactccacaaatgatgcaggtgcagttagtgctcaatcaaaacctaag actgataaaacgaagtgtggagttaaaaggaaaaaacaaccaaattctagtgctaatgtacaaaatactcacaacgatct ctcatgggaagctttatcgaaagaggaagaggaggtggcggcatctacgttgcgcaaatttcctgtgtataaacggcatg tttctgattcctcatctgcagacgaatcctcaacagtggaggaaatcatatcttctgtaaaccctgccctgacgttaaaa ccactcaagttagtcaatcctttattacgagtaaatcaaagtgcaatgtctgaatatgataatctgaccaatcagtatgc acctgcctcacacaggtcacatgctagcacaggaactgtcttctgcaaaccctgggaaaacagccattttttcgaagcgt taatggatcccaaaaactgtaaactgccgccaccgatggatgtgaacgagagaatacatgcttggcaggcagcaagtcag actttcaataaggaaggcaatccaaatcgtgacagtttattttctgaaacttcagtagatgacgagaatttagacggtga agaaacgtgtactagtattcatactcctgcggtttatgtgcgaccaccatctgaggatgacgctgaggaggtcaaaggtc acaagtcacggagactgatacagcaaggtcatagagtcctcagctatgcatcagaagatgagaatgtgccgtcatttcct ctcaacctgcctggtttgaagaacaccattccgcctgcacatccagtacatacacagtttctccagaacaagctgaagtc ttcacatcctgactctaaaatagaggagtatatctgcagactttcacgtgaccatagtacaacatttggtagtacaatag aaaacttcatacagtgtacgctggagagccaggagacaaacccacatcacgtaaccaggaatgtccggcagtttatgaca ggcattagaaactacctggtaaaacatggagagggggagttagaggacatcatagaaagagagagaaccaggttgaaggc agatgagatcctgaacattgatgccattatagagagagcccttcatacatgtgtactacggcctctcaaacaccacatat acaacctctttgtggatgaatatacaaggaatggtagccttcctaccctatctatgaacctgaagtatgcaagaacaaaa tcagctgaggaaataggtcttaggcctgacctgtcaccacctgagggtcctatgatagagctgattaaggtccacctgac aaagatgcagaagtctttctctcctctcaagaaactagagaatctactctgtgcaacttcttgtatttacagatgtgttt ccaatggatcacagaagaagtctgggcaggtgtctatgggggcagatgacttcttgccgatgcttatctatgtgctagtg cattgtgggatggtttctgtggagatagaagcagactatatgtggggtttgatccagccgtctgtcctcagtggggaagg gggatattatctgacgtcactcagcagtgctgtattggtcttgaagaactttcgcagcatgcatgaaatgcagaatatgc aacatgatggtagatatcccagtataagtgacatgcagggcttcttaaagatagcaatccctgacgagctaagagataca atcatatggaaaactctgcctgtacgacctaatatgactactaaagatgtctgtgctatgatagctcacaagttcaagat aacaaatcctcaggattacggtctctacatacttgtcaaaggagaggaaacgagaatgggagatatggactgccctcagt tgtttaagatagaccacctcacacaagggagagaatgtgtgtttgcatacaaacggaatgaagctaatattgcttggcct atgtcactgaagaaacagtga |
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Protein
| Protein ID | pfu_aug2.0_1777.1_25142.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1777.1_25142.t1 MEGQVSPELDDQQQSNYHKLNLHRLELVLMLNNIASDLDLLLHDLCHIYPRPDQASGSRFQTFGKGQYCDSSPGVGEDSA FGTLASTDSYACEQKLRSDSLQSGHLDVFGLEETGLQIPVYPDISNSDPISESRAINFEERLTKTHSIWNSSQPSTMALS AQFPEKGRANVDHYLIQHTDQGYRVQGSLHYFNSIPNLIVYYHENTEELPYRLLLPPTIRRAKTLQELTSLSYLGQDFWT SYRFDRGVLGYSNFENRNLHKSTSEPVNITQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXSHFHGTTPQIARIMPSKSMQQFASESPFSSSAASTLEKSSPSFHSLNESASSSERNLVTFSASPGKENNIDQNVTS DSTCCKCKSKISSTQTRSQDSLPSSANSSERSRSVERTMPNTHPRTPSKHNSNLYFTTSIELLNNSENQYFHSNLSDKMS DYEDIWKHSASATPVPSVKLPPMRTFSTQASENDAYESPPEKKPVEPIYSKPDKSAMNNKGSKKDLNTRVQKSVETTHND LSGNDVSQNEPNSLQGNTVSKEEELSENVKCNLRRTLSLDDYKIKNAKRSDSVETKLTEAKSTASVHTQTSPKMRNKPGP IPPVDNDASSTSTALSSVKSPVYAEPFDSLVPPKEKSKKSKIRRRSAPSMGFSARKAKGVSQTPALETIFSPNFDHSLSL HESFNFKQIDNHSCAMMDSLPPSGLRRTQSAKSRLRHSETAPVLNRDSLNEVVQKLEKLSVQRDNSTNDAGAVSAQSKPK TDKTKCGVKRKKQPNSSANVQNTHNDLSWEALSKEEEEVAASTLRKFPVYKRHVSDSSSADESSTVEEIISSVNPALTLK PLKLVNPLLRVNQSAMSEYDNLTNQYAPASHRSHASTGTVFCKPWENSHFFEALMDPKNCKLPPPMDVNERIHAWQAASQ TFNKEGNPNRDSLFSETSVDDENLDGEETCTSIHTPAVYVRPPSEDDAEEVKGHKSRRLIQQGHRVLSYASEDENVPSFP LNLPGLKNTIPPAHPVHTQFLQNKLKSSHPDSKIEEYICRLSRDHSTTFGSTIENFIQCTLESQETNPHHVTRNVRQFMT GIRNYLVKHGEGELEDIIERERTRLKADEILNIDAIIERALHTCVLRPLKHHIYNLFVDEYTRNGSLPTLSMNLKYARTK SAEEIGLRPDLSPPEGPMIELIKVHLTKMQKSFSPLKKLENLLCATSCIYRCVSNGSQKKSGQVSMGADDFLPMLIYVLV HCGMVSVEIEADYMWGLIQPSVLSGEGGYYLTSLSSAVLVLKNFRSMHEMQNMQHDGRYPSISDMQGFLKIAIPDELRDT IIWKTLPVRPNMTTKDVCAMIAHKFKITNPQDYGLYILVKGEETRMGDMDCPQLFKIDHLTQGRECVFAYKRNEANIAWP MSLKKQ |
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