Gene
| Gene Model ID | pfu_aug2.0_179.1_30351 |
|---|---|
| Locus | scaffold179.1 : 78016 ... 126616 : + |
| To GenomeBrowser | scaffold179.1:78016..126616 |
| Genes list of scaffold | scaffold179.1 |
| Synonym | pfu_aug1.0_2176.1_08246 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_179.1_30351.t2 | 8 | 1 | Collagen | 111 | 130 | 0.0 | 170.7 | 8.8e-06 | 0.044 | 13.3 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 2 | Collagen | 135 | 187 | 0.0 | 170.7 | 8.5e-13 | 4.2e-09 | 35.8 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 3 | Collagen | 201 | 258 | 0.0 | 170.7 | 2.0e-12 | 9.9e-09 | 34.6 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 4 | Collagen | 237 | 297 | 0.0 | 170.7 | 1.9e-10 | 9.6e-07 | 28.2 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 5 | Collagen | 321 | 327 | 0.0 | 170.7 | 0.071 | 350.0 | 0.8 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 6 | Collagen | 394 | 452 | 0.0 | 170.7 | 4.2e-14 | 2.1e-10 | 40.0 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 7 | Collagen | 449 | 506 | 0.0 | 170.7 | 0.98 | 4800.0 | -2.9 |
| pfu_aug2.0_179.1_30351.t2 | 8 | 8 | Collagen | 567 | 592 | 0.0 | 170.7 | 7.4e-07 | 0.0036 | 16.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_179.1_30351.t2 | gi|658902577|ref|XP_008434066.1| | PREDICTED: collagen alpha-1(XXV) chain isoform X3 [Poecilia reticulata] | 6.0e-29 |
| pfu_aug2.0_179.1_30351.t2 | gi|511847541|ref|XP_004748152.1| | PREDICTED: collagen alpha-1(XXV) chain isoform X7 [Mustela putorius furo] | 1.0e-27 |
| pfu_aug2.0_179.1_30351.t2 | gi|568924443|ref|XP_006502329.1| | PREDICTED: collagen alpha-1(XXV) chain isoform X3 [Mus musculus] | 2.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_179.1_30351.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30351.t1 atggaaagtaaaagtgcttcaaacaacactaagaagaaaaagagagatttctgtacgaagtgttctctttggatattgat aagtatagtactaggcgtggtggccttcctggccgccctcaccgtgtggaccattatatcatatagagaccgggtacagg atctggagggaagggtagtaacgttagaagtggaatatgaaagcttcaaggacaatattgatggatacatactacaaacg attgaatctgctgtttctaagagactagaggaagaagaagataaagtcagcgagcggagatataaaagacaagcagaatg tacatgtcctccaggaccaccaggagaaaagggagaaaggggaatgatgggcagagatggatttccgggtgctacagcta tgggtgaaaaaggaccacctggacctataggtccaaagggagataagggagatccaggacaaaaaggttccgagggttta ccgggatatgacgggcagcctggagccaatggagctaagggagacaagggtgatcgtggactacggggtctccgtggaga gtttaatcatgagcatgaagtaaccattctggaattaaagggtgagccgggagaaccaggagttaaaggaattaaaggcg attctggtcctgcggggccatctggacttccgggttttgatggaatgcctgggccacctggagaacctggtccccaagga atacaaggtccaccgggaagaaatggcattccaggaagctcgcggaggtcaaggacatgtcgtttagaggtcaggaatag taattcaaacaaagggtcatcaaggacaactgacgataataaaggaagtgacagtgaggacgatgatgacggccagaata gaggtcgtaggtcaaggttatacagaagatgtatgtcaaatgcacgatggagagtgagagcaagagccgcgcagggcgaa atcggcttacccggttccacaggcccgcgtggagaacaaggagagagaggcaagcggggtaaacggggtaggcgcggaaa gaaaggaaagcgaggggatagaggacccccgggagatacaggagagaaaggagatcagggtatcaaaggtgaactaggtg acatgggaccacagggagatagaggaaccccaggcatacctggaagagagggtaaacctggaccaagaggaatcacgggt gcaaaaggagagaagggtgaagttggtccagtcgggcctccggggaaagatggtctcattggaccgccagggctccctgg tccaccgggagaaccaggattagtaggagatgctggagacggaaaaggtggacaaagaattgggccaatgggtcttcaag gtccaccaggaattaagggtgataaaggtccggtgggtcctaaaggcgagccaggaccccctgggcctcccgggcctcta acaactgctgaaggagggacatgttcatgtccgaaaggagaaaagggagataagggtgacagaggacgtcgtggtaagcg aggacgaaggggggaacagggtattccaggtttagatgccccttgccctgtgggtgaaaatggtttgcccttacctggat gtggatacgggctgtttgataagggccttcccggagtaccaagtaacacgcccatatcacagatatga |
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| Transcript ID | pfu_aug2.0_179.1_30351.t2 |
| Definition | - |
>pfu_aug2.0_179.1_30351.t2 atggaaagtaaaagtgcttcaaacaacactaagaagaaaaagagagatttctgtacgaagtgttctctttggatattgat aagtatagtactaggcgtggtggccttcctggccgccctcaccgtgtggaccattatatcatatagagaccgggtacagg atctggagggaagggtagtaacgttagaagtggaatatgaaagcttcaaggacaatattgatggatacatactacaaacg attgaatctgctgtttctaagagactagaggaagaagaagataaagtcagcgagcggagatataaaagacaagcagaatg tacatgtcctccaggaccaccaggagaaaagggagaaaggggaatgatgggcagagatggatttccgggtgctacagcta tgggtgaaaaaggaccacctggacctataggtccaaagggagataagggagatccaggacaaaaaggttccgagggttta ccgggatatgacgggcagcctggagccaatggagctaagggagacaagggtgatcgtggactacggggtctccgtggaga gtttaatcatgagcatgaagtaaccattctggaattaaagggtgagccgggagaaccaggagttaaaggaattaaaggcg attctggtcctgcggggccatctggacttccgggttttgatggaatgcctgggccacctggagaacctggtccccaagga atacaaggtccaccgggaagaaatggcattccaggaagctcgggtaaaacaggacctattggcccgaagggagaaatagg tttacccggtaaatctgtaaccggaagtcaagggccagtaggacccccaggaccagctggtagaaagggggacagggggc gacctggtgctgtttctgtaggcccaggtagaaattccgtctcctcaaatccccggggctttccggcagggtggatcagg ggggaaaagggtgaacggggtccaaggcggaggtcaaggacatgtcgtttagaggtcaggaatagtaattcaaacaaagg gtcatcaaggacaactgacgataataaaggaagtgacagtgaggacgatgatgacggccagaatagaggtcgtaggtcaa ggttatacagaagatgtatgtcaaatgcacgatggagagtgagagcaagagccgcgcagggcgaaatcggcttacccggt tccacaggcccgcgtggagaacaaggagagagaggcaagcggggtaaacggggtaggcgcggaaagaaaggaaagcgagg ggatagaggacccccgggagatacaggagagaaaggagatcagggtatcaaaggtgaactaggtgacatgggaccacagg gagatagaggaaccccaggcatacctggaagagagggtaaacctggaccaagaggaatcacgggtgcaaaaggagagaag ggtgaagttggtccagtcgggcctccggggaaagatggtctcattggaccgccagggctccctggtccaccgggagaacc aggattagtaggagatgctggagacggaaaaggtggacaaagaattgggccaatgggtcttcaaggtccaccaggaatta agggtgataaaggtccggtgggtcctaaaggcgagccaggaccccctgggcctcccgggcctctaacaactgctgaagga gggacatgttcatgtccgaaaggagaaaagggagataagggtgacagaggacgtcgtggtaagcgaggacgaagggggga acagggtattccaggtttagatgccccttgccctgtgggtgaaaatggtttgcccttacctggatgtggatacgggctgt ttgataagggccttcccggagtaccaagtaacacgcccatatcacagatatga |
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Protein
| Protein ID | pfu_aug2.0_179.1_30351.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30351.t1 MESKSASNNTKKKKRDFCTKCSLWILISIVLGVVAFLAALTVWTIISYRDRVQDLEGRVVTLEVEYESFKDNIDGYILQT IESAVSKRLEEEEDKVSERRYKRQAECTCPPGPPGEKGERGMMGRDGFPGATAMGEKGPPGPIGPKGDKGDPGQKGSEGL PGYDGQPGANGAKGDKGDRGLRGLRGEFNHEHEVTILELKGEPGEPGVKGIKGDSGPAGPSGLPGFDGMPGPPGEPGPQG IQGPPGRNGIPGSSRRSRTCRLEVRNSNSNKGSSRTTDDNKGSDSEDDDDGQNRGRRSRLYRRCMSNARWRVRARAAQGE IGLPGSTGPRGEQGERGKRGKRGRRGKKGKRGDRGPPGDTGEKGDQGIKGELGDMGPQGDRGTPGIPGREGKPGPRGITG AKGEKGEVGPVGPPGKDGLIGPPGLPGPPGEPGLVGDAGDGKGGQRIGPMGLQGPPGIKGDKGPVGPKGEPGPPGPPGPL TTAEGGTCSCPKGEKGDKGDRGRRGKRGRRGEQGIPGLDAPCPVGENGLPLPGCGYGLFDKGLPGVPSNTPISQI |
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| Protein ID | pfu_aug2.0_179.1_30351.t2 |
| Definition | - |
>pfu_aug2.0_179.1_30351.t2 MESKSASNNTKKKKRDFCTKCSLWILISIVLGVVAFLAALTVWTIISYRDRVQDLEGRVVTLEVEYESFKDNIDGYILQT IESAVSKRLEEEEDKVSERRYKRQAECTCPPGPPGEKGERGMMGRDGFPGATAMGEKGPPGPIGPKGDKGDPGQKGSEGL PGYDGQPGANGAKGDKGDRGLRGLRGEFNHEHEVTILELKGEPGEPGVKGIKGDSGPAGPSGLPGFDGMPGPPGEPGPQG IQGPPGRNGIPGSSGKTGPIGPKGEIGLPGKSVTGSQGPVGPPGPAGRKGDRGRPGAVSVGPGRNSVSSNPRGFPAGWIR GEKGERGPRRRSRTCRLEVRNSNSNKGSSRTTDDNKGSDSEDDDDGQNRGRRSRLYRRCMSNARWRVRARAAQGEIGLPG STGPRGEQGERGKRGKRGRRGKKGKRGDRGPPGDTGEKGDQGIKGELGDMGPQGDRGTPGIPGREGKPGPRGITGAKGEK GEVGPVGPPGKDGLIGPPGLPGPPGEPGLVGDAGDGKGGQRIGPMGLQGPPGIKGDKGPVGPKGEPGPPGPPGPLTTAEG GTCSCPKGEKGDKGDRGRRGKRGRRGEQGIPGLDAPCPVGENGLPLPGCGYGLFDKGLPGVPSNTPISQI |
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