Gene
| Gene Model ID | pfu_aug2.0_179.1_30353 |
|---|---|
| Locus | scaffold179.1 : 140786 ... 147622 : + |
| To GenomeBrowser | scaffold179.1:140786..147622 |
| Genes list of scaffold | scaffold179.1 |
| Synonym | pfu_aug1.0_97761.1_42358 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_179.1_30353.t1 | 2 | 1 | Histone | 20 | 82 | 2.0e-22 | 79.1 | 1.4e-13 | 5.1e-10 | 39.3 |
| pfu_aug2.0_179.1_30353.t1 | 2 | 2 | Histone | 84 | 130 | 2.0e-22 | 79.1 | 2.4e-13 | 8.9e-10 | 38.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_179.1_30353.t1 | gi|663267303|ref|XP_008493769.1| | PREDICTED: histone H2A.V [Calypte anna] | 3.0e-37 |
| pfu_aug2.0_179.1_30353.t1 | gi|260830776|ref|XP_002610336.1| | hypothetical protein BRAFLDRAFT_72473 [Branchiostoma floridae] | 5.0e-37 |
| pfu_aug2.0_179.1_30353.t1 | gi|184186115|ref|NP_001116980.1| | histone H2 A.F/Z [Strongylocentrotus purpuratus] | 1.0e-36 |
| pfu_aug2.0_179.1_30353.t1 | gi|340729962|ref|XP_003403261.1| | PREDICTED: histone H2A.V [Bombus terrestris] | 1.0e-36 |
| pfu_aug2.0_179.1_30353.t1 | gi|380018341|ref|XP_003693090.1| | 1.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_179.1_30353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30353.t1 atggcaggtggaaaagctgggaaagactctggaaaggcgaaagccaaagcaatctctcgttctgcaagagctggacttca gttccccgttggtcgtatccacagacatctgaaaaacaggaccacaagccatggacgtgtgggtgccacagccgctgtgt acagtgctgctattctggaatatctcacagctgaagcaggtggaaaagctgggaaagactctggaaaggcgaaagccaaa gcaatctctcgttctgcaagagctggacttcagttccccgttggtcgtatccacagacatctgaaaaacaggaccacaag ccatggacgtgtgggtgccacagccgctgtgtacagtgctgctattctggaatatctcacagctgaaattgattag |
|
Protein
| Protein ID | pfu_aug2.0_179.1_30353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30353.t1 MAGGKAGKDSGKAKAKAISRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEAGGKAGKDSGKAKAK AISRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEID |
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