Gene
| Gene Model ID | pfu_aug2.0_179.1_30357 |
|---|---|
| Locus | scaffold179.1 : 205322 ... 212738 : - |
| To GenomeBrowser | scaffold179.1:205322..212738 |
| Genes list of scaffold | scaffold179.1 |
| Synonym | pfu_aug1.0_1837.1_08145 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_179.1_30357.t2 | 4 | 1 | Cadherin | 35 | 58 | 6.5e-10 | 39.1 | 4.2 | 13000.0 | -3.5 |
| pfu_aug2.0_179.1_30357.t2 | 4 | 2 | Cadherin | 126 | 232 | 6.5e-10 | 39.1 | 1.4e-09 | 4.2e-06 | 26.9 |
| pfu_aug2.0_179.1_30357.t2 | 4 | 3 | Cadherin | 268 | 289 | 6.5e-10 | 39.1 | 0.073 | 220.0 | 2.2 |
| pfu_aug2.0_179.1_30357.t2 | 4 | 4 | Cadherin | 319 | 363 | 6.5e-10 | 39.1 | 4.0e-05 | 0.12 | 12.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_179.1_30357.t2 | gi|125772752|ref|XP_001357648.1| | GA15934 [Drosophila pseudoobscura pseudoobscura] | 5.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_179.1_30357.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30357.t1 atggccatgggcataacgtgtttttccatgtttctactcaccctgggagcttatgaagtcaacagtttctgtaacgagac actgtcaaatgttgtccaggttgatgaaactgaaacaaatgccgtgatccaagatatacgggtgtatcccggtgagcaat ggaacttcaccattagagggatcaactccaacctacagggtgctctggcagagagggtcttacgaggatactttgacctc tttcaaaatgatactcagatggtcttctctgtacagaaagcgatcaacaaagaatacctgttcagggtatttcttacagc acgggtgattgtcaatccggttaacgaggagagtccagtatttcagaactcaccatacaatgttgcggtgccagagaaca cgcaggtgaatgacgtagtttttacgttcctcaacgttactgacgccgatataccccagacgacgacgttctactaccaa ctcattaactcaggaaactcggagattgacgcctccaattttttctatatttcctcggcaaccagtaaccaagtacgact cggtccgacgttaatagactttgacacaaacaaaaacacaaataatactctgtcctatacaactacagtagcggttcagg actcctatgataacacagctcggacaggaaccacttatattacttttcaaatcactgatgttgatgatcttccgcctaag ttcacgcttccaggatgtgacgtcaactgtgcacctgtatacacggctaaagttaaagacacgtttccaagtcctttgga catcagtccacagcctataggagcccgtgaccaagacacgctcaattatagaatactgttctccatcaaaaatgacacgg agggaatgtaccaggcttttcgtattgaccgtttaactggagcggtaatacaaactgcagagtcaccctccggagtactg gtgattgtggcgacagaagattcaagtatgagacattctgctatagctacaatactgattcaaagagagggagacagtaa caggaccaacggtcctcccctggtacagaggtctacagacgacacaagcagcgccaacactcagactataggcataattg taggggtctttgttcttgttatcattgctatccttgtgggagcttttgtcttcttcaggaagcgactttggaagaaaact gtagatcccgtcggggaacccaagcaaagttctaggatctcctctgaaggagagttgacgcccgatgatcaatcgcggtc acagagtaaacttgatttgttggcagcacaattttacccgacacctgctaccaaaaatagtgtgcttccacctctgaaac atgatatgtcaataggaacagacgacagccatcttaggaagaaacgaccccggaagcggaagaagaaagaaccggaaata tatgatggaaccaggacgtatgacatggaagcagatccagagttcttctcttctaaagacaaaactaagatcaaaagatc tgcaagaagcattaaagaaaataaaatggactcaagatattggataactatacacgacggatatcaagattattag |
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| Transcript ID | pfu_aug2.0_179.1_30357.t2 |
| Definition | - |
>pfu_aug2.0_179.1_30357.t2 atggccatgggcataacgtgtttttccatgtttctactcaccctgggagcttatgaagtcaacagtttctgtaacgagac actgtcaaatgttgtccaggttgatgaaactgaaacaaatgccgtgatccaagatatacgggtgtatcccggtgagcaat ggaacttcaccattagagggatcaactccaacctacagggtgctctggcagagagggtcttacgaggatactttgacctc tttcaaaatgatactcagatggtcttctctgtacagaaagcgatcaacaaagaatacctgttcagggtatttcttacagc acgggtgattgtcaatccggttaacgaggagagtccagtatttcagaactcaccatacaatgttgcggtgccagagaaca cgcaggtgaatgacgtagtttttacgttcctcaacgttactgacgccgatataccccagacgacgacgttctactaccaa ctcattaactcaggaaactcggagattgacgcctccaattttttctatatttcctcggcaaccagtaaccaagtacgact cggtccgacgttaatagactttgacacaaacaaaaacacaaataatactctgtcctatacaactacagtagcggttcagg actccagtgataacacagctcggacaggaaccacttatattacttttcaaatcactgatgttgatgatcttccgccaaag ttcacgcttccaggatgtgacgtcaactgtgcacctgtatacacggctaaagttaaagacacgtttccagactcctatga taacacagctcggacaggaaccacttatattacttttcaaatcactgatgttgatgatcttccgcctaagttcacgcttc caggatgtgacgtcaactgtgcacctgtatacacggctaaagttaaagacacgtttccaagtcctttggacatcagtcca cagcctataggagcccgtgaccaagacacgctcaattatagaatactgttctccatcaaaaatgacacggagggaatgta ccaggcttttcgtattgaccgtttaactggagcggtaatacaaactgcagagtcaccctccggagtactggtgattgtgg cgacagaagattcaagtatgagacattctgctatagctacaatactgattcaaagagagggagacagtaacaggaccaac ggtcctcccctggtacagaggtctacagacgacacaagcagcgccaacactcagactataggcataattgtaggggtctt tgttcttgttatcattgctatccttgtgggagcttttgtcttcttcaggaagcgactttggaagaaaactgtagatcccg tcggggaacccaagcaaagttctaggatctcctctgaaggagagttgacgcccgatgatcaatcgcggtcacagagtaaa cttgatttgttggcagcacaattttacccgacacctgctaccaaaaatagtgtgcttccacctctgaaacatgatatgtc aataggaacagacgacagccatcttaggaagaaacgaccccggaagcggaagaagaaagaaccggaaatatatgatggaa ccaggacgtatgacatggaagcagatccagagttcttctcttctaaagacaaaactaagatcaaaagatctgcaagaagc attaaagaaaataaaatggactcaagatattggataactatacacgacggatatcaagattattag |
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Protein
| Protein ID | pfu_aug2.0_179.1_30357.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30357.t1 MAMGITCFSMFLLTLGAYEVNSFCNETLSNVVQVDETETNAVIQDIRVYPGEQWNFTIRGINSNLQGALAERVLRGYFDL FQNDTQMVFSVQKAINKEYLFRVFLTARVIVNPVNEESPVFQNSPYNVAVPENTQVNDVVFTFLNVTDADIPQTTTFYYQ LINSGNSEIDASNFFYISSATSNQVRLGPTLIDFDTNKNTNNTLSYTTTVAVQDSYDNTARTGTTYITFQITDVDDLPPK FTLPGCDVNCAPVYTAKVKDTFPSPLDISPQPIGARDQDTLNYRILFSIKNDTEGMYQAFRIDRLTGAVIQTAESPSGVL VIVATEDSSMRHSAIATILIQREGDSNRTNGPPLVQRSTDDTSSANTQTIGIIVGVFVLVIIAILVGAFVFFRKRLWKKT VDPVGEPKQSSRISSEGELTPDDQSRSQSKLDLLAAQFYPTPATKNSVLPPLKHDMSIGTDDSHLRKKRPRKRKKKEPEI YDGTRTYDMEADPEFFSSKDKTKIKRSARSIKENKMDSRYWITIHDGYQDY |
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| Protein ID | pfu_aug2.0_179.1_30357.t2 |
| Definition | - |
>pfu_aug2.0_179.1_30357.t2 MAMGITCFSMFLLTLGAYEVNSFCNETLSNVVQVDETETNAVIQDIRVYPGEQWNFTIRGINSNLQGALAERVLRGYFDL FQNDTQMVFSVQKAINKEYLFRVFLTARVIVNPVNEESPVFQNSPYNVAVPENTQVNDVVFTFLNVTDADIPQTTTFYYQ LINSGNSEIDASNFFYISSATSNQVRLGPTLIDFDTNKNTNNTLSYTTTVAVQDSSDNTARTGTTYITFQITDVDDLPPK FTLPGCDVNCAPVYTAKVKDTFPDSYDNTARTGTTYITFQITDVDDLPPKFTLPGCDVNCAPVYTAKVKDTFPSPLDISP QPIGARDQDTLNYRILFSIKNDTEGMYQAFRIDRLTGAVIQTAESPSGVLVIVATEDSSMRHSAIATILIQREGDSNRTN GPPLVQRSTDDTSSANTQTIGIIVGVFVLVIIAILVGAFVFFRKRLWKKTVDPVGEPKQSSRISSEGELTPDDQSRSQSK LDLLAAQFYPTPATKNSVLPPLKHDMSIGTDDSHLRKKRPRKRKKKEPEIYDGTRTYDMEADPEFFSSKDKTKIKRSARS IKENKMDSRYWITIHDGYQDY |
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