Gene
| Gene Model ID | pfu_aug2.0_179.1_30369 |
|---|---|
| Locus | scaffold179.1 : 419759 ... 439054 : - |
| To GenomeBrowser | scaffold179.1:419759..439054 |
| Genes list of scaffold | scaffold179.1 |
| Synonym | pfu_aug1.0_18674.1_32943 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_179.1_30369.t1 | 3 | 1 | DUF3677 | 12 | 29 | 0.0 | 161.6 | 1.5 | 4500.0 | -1.9 |
| pfu_aug2.0_179.1_30369.t1 | 3 | 2 | DUF3677 | 328 | 391 | 0.0 | 161.6 | 1.1e-24 | 3.2e-21 | 75.5 |
| pfu_aug2.0_179.1_30369.t1 | 3 | 3 | DUF3677 | 462 | 542 | 0.0 | 161.6 | 1.1e-28 | 3.2e-25 | 88.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_179.1_30369.t1 | gi|564378515|ref|XP_006249050.1| | PREDICTED: integrator complex subunit 1-like isoform X1 [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_179.1_30369.t1 | gi|74214901|dbj|BAE33457.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_179.1_30369.t1 | gi|564378517|ref|XP_003751185.2| | PREDICTED: integrator complex subunit 1-like isoform X2 [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_179.1_30369.t1 | gi|260809101|ref|XP_002599345.1| | hypothetical protein BRAFLDRAFT_117356 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_179.1_30369.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30369.t1 tgcacatagcaccacccggtgattttatagctctgggcaagcaatcaaaacaggattcagattcatcaaaactagcccag ctgtctcagaagaaacttggatccggtttggacagaaaaagggatgctccctctgccccaatacctggggcattggtcaa aaggccaaagattgtcccccagggccagactttcacacccttgggtcgggcagagactgagagaagagcttcccctgcac ctacaactctctcacagtttgaggagctggcaatagaagttgattcccataatttgttggaggaagtattggaggcagaa gacacgtgtaatgatgagagaatggaaggcctactttgtggagcggtcaagcacttacattacaacaggtcaaaaccgga ccaggccgtttacttgaccttgatgtacttggccaaaacacactcagcaattttcaacagcgacgttgtcatacaggcca tatctagcttgctaaggagagatttgtctctgaatttcaagtcgaagggcaattgtttagtttctgtgttagcctgtgag gtgctaatggaggcattcgacaaggaagataactggccagacgactttgtaaaggtatttgtagaggattcattaggaga gagagtatgggtggacaggtcagattgcaaagccttcacagataacattattacagccttcaataccaatctacctgtaa aacctacgacaagctctgaaactaatcctactaaggaaacctctggaactgcaagtccagttgtcatgtttttacaagag gaagatgaaagcactactggcagtggagctagtgaagaaaaagttctagccatagaggaaataaaaaacatagccgtaac tcctaggtatcagtttcagcaagagactatagaaagttacatcatggatataatcaaggatcagttcaataaacgacagc caatggattccatgtcacgtaattttattcgtttcctaacggctacaagcggatatggagaagtcagactattagctgca cagaaactagaaatatggctccagaatccaaagctttctaggtcagctcaggaactgttgatggccatatgtatgaattg taaccaacacgaccagaacgatttagaggtggtggctctactagtcaagatcccaagtccagttgtcatgtttttacaag aagaagatgaaagcactactggtagtggagctagcgaagaaaaagttctagccatagaggaaattaaaaacatagccgta actcctaggtatcagtttcagcaagagactatagaaagttatatcatggatataatcaaggatcagttcaataaacgaca gccaatggattccatgtcacgtaattttattcgtttcctgacggctacaagcggatatggagaagtcagactattagcgg cacagaaactagaaatatggctccagaatccaaagctttctaggtcagctcaggaactgttgatggccatatgtatgaat tgtaaccaacacgaccagaacgatttagaggtggtggccctactggtcaagatccgtatgaagaccaagccccttcttaa ccacttcctaagcagtctcaaggagttgctgaaccagagccaggagaatttacgactggtaatgactcatactatatata atgagctgtcaaacaccaggaatcctaacaacatggctgttttaggtgtactgttccaatcagctggagaacaggcagca aagactctggcagaaattgtacaagaccttctggccaacaaagatgactatttacgtgcagtacgtgcactgttacgaga aatcgccagaactcagcgacatggaatcaatttttctgctttctgtattggtttattccaggagagagcagatccaaagt tccttgacatggatcataatttgagggaacgttatgtaacttcaataacagacctagtcacactgagtatctttctgagc attagctcttctgtcagagaggctgcttctgctgtcacaaagggagagaaaaaagatttggacactttacacaccttccg acagcaggtttccctgatacagagggatgctgtatggtggatgcacaccattgttccctccattatagaagtcaaactat ctgactatgtcttctgtttgcataagattctgttcatggagaattcagaaacttactacaacacagacaactggcctaca gaacaagatagagtaaaagaagcagaaaagaccggcgtcttctctccggcattctctgtgtaa |
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Protein
| Protein ID | pfu_aug2.0_179.1_30369.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30369.t1 HIAPPGDFIALGKQSKQDSDSSKLAQLSQKKLGSGLDRKRDAPSAPIPGALVKRPKIVPQGQTFTPLGRAETERRASPAP TTLSQFEELAIEVDSHNLLEEVLEAEDTCNDERMEGLLCGAVKHLHYNRSKPDQAVYLTLMYLAKTHSAIFNSDVVIQAI SSLLRRDLSLNFKSKGNCLVSVLACEVLMEAFDKEDNWPDDFVKVFVEDSLGERVWVDRSDCKAFTDNIITAFNTNLPVK PTTSSETNPTKETSGTASPVVMFLQEEDESTTGSGASEEKVLAIEEIKNIAVTPRYQFQQETIESYIMDIIKDQFNKRQP MDSMSRNFIRFLTATSGYGEVRLLAAQKLEIWLQNPKLSRSAQELLMAICMNCNQHDQNDLEVVALLVKIPSPVVMFLQE EDESTTGSGASEEKVLAIEEIKNIAVTPRYQFQQETIESYIMDIIKDQFNKRQPMDSMSRNFIRFLTATSGYGEVRLLAA QKLEIWLQNPKLSRSAQELLMAICMNCNQHDQNDLEVVALLVKIRMKTKPLLNHFLSSLKELLNQSQENLRLVMTHTIYN ELSNTRNPNNMAVLGVLFQSAGEQAAKTLAEIVQDLLANKDDYLRAVRALLREIARTQRHGINFSAFCIGLFQERADPKF LDMDHNLRERYVTSITDLVTLSIFLSISSSVREAASAVTKGEKKDLDTLHTFRQQVSLIQRDAVWWMHTIVPSIIEVKLS DYVFCLHKILFMENSETYYNTDNWPTEQDRVKEAEKTGVFSPAFSV |
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