Gene
| Gene Model ID | pfu_aug2.0_1790.1_01834 |
|---|---|
| Locus | scaffold1790.1 : 58798 ... 62935 : - |
| To GenomeBrowser | scaffold1790.1:58798..62935 |
| Genes list of scaffold | scaffold1790.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein retinal degeneration b-like | GO:0005622 GO:0006810 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1790.1_01834.t1 | 1 | 1 | LNS2 | 83 | 212 | 6.7e-37 | 126.4 | 1.4e-40 | 1.0e-36 | 125.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1790.1_01834.t1 | gi|524914599|ref|XP_005112112.1| | PREDICTED: protein retinal degeneration B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1790.1_01834.t1 | gi|676488552|ref|XP_009064654.1| | hypothetical protein LOTGIDRAFT_196531, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1790.1_01834.t1 | gi|291234267|ref|XP_002737070.1| | PREDICTED: membrane-associated phosphatidylinositol transfer protein 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1790.1_01834.t1 | gi|383865293|ref|XP_003708109.1| | PREDICTED: protein retinal degeneration B isoform X1 [Megachile rotundata] | 0.0 |
| pfu_aug2.0_1790.1_01834.t1 | gi|350411856|ref|XP_003489471.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1790.1_01834.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1790.1_01834.t1 atgtatggacccttcgatgtcacttcgttatcaggagaaaaggttgacattcatgtcatggaacaatctacagctgaatg gaggtacctgacgacggaaataaccgacaaacatggccgcctaacttataacataccgactgataaagctctccctaatg gcatgcatcaagtcaaaattgtggtgcgaggtgatcacagcacagccgatttctaccttaccgtcctaccgcccaaaaca gaaacagttatatttagcattgatgggtcattcactgccagtatgtcaatatcgggtaaagaccctaaagtcagggccgg tgcggtagatgtcgtcaggcactggcaggaccagggttatttgatactgtatgtaacggcacgacccgacatgcagcatc gtagagttgtggcatggctagccatgcataacttcccacatggcatggtggcgttcatggatggtctgtcaaaggagcca ctcaagcaaaaattaaactatttgaaaagcttaaaaaatgatgctcaagtatcattcaaagcagcatatgggtccagtaa ggatatctatgtgtataaagagctgggaatgacaacacaacagatatttgtcatcggcaaggcatccaagaagtatttat cacaggcccaggttttatgtgatggttattccgcccacttaaacaacctgctatcaatgggcaccactcgtccagcagta ggtaacgctagactcttcattcagaaaggttggttctgcttacctcaccagtctgaaggtaaaaaacctgtcaagaggat gtcgtccaatcagagtacagggggtgactttcttaacaaatcaggtggtttcttacaaacaacaatatcagtgggtgctg atggcaacacagtggtgcagcaaggaaaagggggtggatcaaggacaaggggatcctcccctcagcctaaaatagggcta aaagaggtgccaagatag |
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Protein
| Protein ID | pfu_aug2.0_1790.1_01834.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1790.1_01834.t1 MYGPFDVTSLSGEKVDIHVMEQSTAEWRYLTTEITDKHGRLTYNIPTDKALPNGMHQVKIVVRGDHSTADFYLTVLPPKT ETVIFSIDGSFTASMSISGKDPKVRAGAVDVVRHWQDQGYLILYVTARPDMQHRRVVAWLAMHNFPHGMVAFMDGLSKEP LKQKLNYLKSLKNDAQVSFKAAYGSSKDIYVYKELGMTTQQIFVIGKASKKYLSQAQVLCDGYSAHLNNLLSMGTTRPAV GNARLFIQKGWFCLPHQSEGKKPVKRMSSNQSTGGDFLNKSGGFLQTTISVGADGNTVVQQGKGGGSRTRGSSPQPKIGL KEVPR |
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