Gene
| Gene Model ID | pfu_aug2.0_1790.1_01836 |
|---|---|
| Locus | scaffold1790.1 : 69887 ... 85505 : - |
| To GenomeBrowser | scaffold1790.1:69887..85505 |
| Genes list of scaffold | scaffold1790.1 |
| Synonym | pfu_aug1.0_2779.1_23081 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1790.1_01836.t1 | 1 | 1 | IP_trans | 1 | 34 | 1.4e-10 | 40.8 | 3.2e-14 | 2.4e-10 | 40.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1790.1_01836.t1 | gi|699255511|ref|XP_002120698.3| | PREDICTED: protein retinal degeneration B [Ciona intestinalis] | 5.0e-18 |
| pfu_aug2.0_1790.1_01836.t1 | gi|499003920|ref|XP_004535205.1| | 1.0e-16 | |
| pfu_aug2.0_1790.1_01836.t1 | gi|751473049|ref|XP_011191865.1| | PREDICTED: protein retinal degeneration B isoform X3 [Bactrocera cucurbitae] | 2.0e-16 |
| pfu_aug2.0_1790.1_01836.t1 | gi|751473057|ref|XP_011191870.1| | PREDICTED: protein retinal degeneration B isoform X7 [Bactrocera cucurbitae] | 3.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_1790.1_01836.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1790.1_01836.t1 atgctccgagctcacagacaagcatgggcctggcaggacgaatggtatggattgaaaatcagtgatattcgacgtttgga gcgagagacccagttagcgctagcgaagaaaatggcagatgttgaagggagtgaagttaagaatcatattcttgataata taagtgaagatgctgacaatgataacgataaagtgaaaattccaatatcagcatccagtgatcatatatctgaatcatct aaatgtttgaacaagacaacgaatcagtcgatagatgacgtatctcatcggtcagtgtcacccagtggatatacgcataa acgatcgttctcaaattcttctaggtccagatcgcaagggggctcgttccatgacatctcggcctccagaatgtttgaga gtatagagagactacaggagacaagctcagatgaagaggaattctttgatgccaaaggcaacgtaacttccgcagatgag caggaattctggtcagacgaggggtcagatacagagtctgaagagaaatcaaaattgcatggaactttggctaaaatgat ttgtttgagaagagcggccgagtcttgctag |
|
Protein
| Protein ID | pfu_aug2.0_1790.1_01836.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1790.1_01836.t1 MLRAHRQAWAWQDEWYGLKISDIRRLERETQLALAKKMADVEGSEVKNHILDNISEDADNDNDKVKIPISASSDHISESS KCLNKTTNQSIDDVSHRSVSPSGYTHKRSFSNSSRSRSQGGSFHDISASRMFESIERLQETSSDEEEFFDAKGNVTSADE QEFWSDEGSDTESEEKSKLHGTLAKMICLRRAAESC |
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