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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1790.1_01837
Locus scaffold1790.1 : 85586 ... 92985 : -
To GenomeBrowser scaffold1790.1:85586..92985
Genes list of scaffold scaffold1790.1
Synonym pfu_aug1.0_2779.1_23081

Manual annotation
Annotation by Blast2GO
Annotation GO
retinal degeneration b GO:0006810 GO:0043231 GO:0046872

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1790.1_01837.t1 1 1 IP_trans 1 144 0.0 235.8 0.0 0.0 235.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1790.1_01837.t1 gi|585664336|ref|XP_006811996.1| PREDICTED: membrane-associated phosphatidylinositol transfer protein 1-like, partial [Saccoglossus kowalevskii] 0.0
pfu_aug2.0_1790.1_01837.t1 gi|390343784|ref|XP_799324.3| 0.0
pfu_aug2.0_1790.1_01837.t1 gi|704233013|ref|XP_010154548.1| PREDICTED: membrane-associated phosphatidylinositol transfer protein 2-like, partial [Eurypyga helias] 0.0
pfu_aug2.0_1790.1_01837.t1 gi|242002956|ref|XP_002436111.1| retinal degeneration B protein, putative [Ixodes scapularis] 0.0

Transcript
Transcript IDpfu_aug2.0_1790.1_01837.t1
Definition-
>pfu_aug2.0_1790.1_01837.t1
atgcttgtgaaggagtacaggatagctttacccctcagcgtggacgagtataggatagctcaactttatatgatccagaa
aaagagtcgagaagaaactcgtggggaaggcagtggcgtagaaatcattgaaaataagccgtacaaagatggaccaggag
gggaagggcaatacacatacaaaatatatcatataggcagtcatttgccaagttggttccgagccatattgcctaagtct
gcgttacgtgttgaggaggaagcttggaatgcttacccgtacacaaaaacacggtaccgatgtccatttatagagaaatt
tctgttggagatagagacaaagtaccttaacgatggaggagagcaggataatttatttaacctgtcacctcaggagttac
gcaataggcagattgtatcgtgcccaattagctcagtcagtaaaagagtgcctgccctattatctggacattgtgaagga
tcctatctctag

Protein
Protein IDpfu_aug2.0_1790.1_01837.t1
Definition-
>pfu_aug2.0_1790.1_01837.t1
MLVKEYRIALPLSVDEYRIAQLYMIQKKSREETRGEGSGVEIIENKPYKDGPGGEGQYTYKIYHIGSHLPSWFRAILPKS
ALRVEEEAWNAYPYTKTRYRCPFIEKFLLEIETKYLNDGGEQDNLFNLSPQELRNRQIVSCPISSVSKRVPALLSGHCEG
SYL

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