Gene
Gene Model ID | pfu_aug2.0_1790.1_01837 |
---|---|
Locus | scaffold1790.1 : 85586 ... 92985 : - |
To GenomeBrowser | scaffold1790.1:85586..92985 |
Genes list of scaffold | scaffold1790.1 |
Synonym | pfu_aug1.0_2779.1_23081 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
retinal degeneration b | GO:0006810 GO:0043231 GO:0046872 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1790.1_01837.t1 | 1 | 1 | IP_trans | 1 | 144 | 0.0 | 235.8 | 0.0 | 0.0 | 235.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1790.1_01837.t1 | gi|585664336|ref|XP_006811996.1| | PREDICTED: membrane-associated phosphatidylinositol transfer protein 1-like, partial [Saccoglossus kowalevskii] | 0.0 |
pfu_aug2.0_1790.1_01837.t1 | gi|390343784|ref|XP_799324.3| | 0.0 | |
pfu_aug2.0_1790.1_01837.t1 | gi|704233013|ref|XP_010154548.1| | PREDICTED: membrane-associated phosphatidylinositol transfer protein 2-like, partial [Eurypyga helias] | 0.0 |
pfu_aug2.0_1790.1_01837.t1 | gi|242002956|ref|XP_002436111.1| | retinal degeneration B protein, putative [Ixodes scapularis] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1790.1_01837.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1790.1_01837.t1 atgcttgtgaaggagtacaggatagctttacccctcagcgtggacgagtataggatagctcaactttatatgatccagaa aaagagtcgagaagaaactcgtggggaaggcagtggcgtagaaatcattgaaaataagccgtacaaagatggaccaggag gggaagggcaatacacatacaaaatatatcatataggcagtcatttgccaagttggttccgagccatattgcctaagtct gcgttacgtgttgaggaggaagcttggaatgcttacccgtacacaaaaacacggtaccgatgtccatttatagagaaatt tctgttggagatagagacaaagtaccttaacgatggaggagagcaggataatttatttaacctgtcacctcaggagttac gcaataggcagattgtatcgtgcccaattagctcagtcagtaaaagagtgcctgccctattatctggacattgtgaagga tcctatctctag |
Protein
Protein ID | pfu_aug2.0_1790.1_01837.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1790.1_01837.t1 MLVKEYRIALPLSVDEYRIAQLYMIQKKSREETRGEGSGVEIIENKPYKDGPGGEGQYTYKIYHIGSHLPSWFRAILPKS ALRVEEEAWNAYPYTKTRYRCPFIEKFLLEIETKYLNDGGEQDNLFNLSPQELRNRQIVSCPISSVSKRVPALLSGHCEG SYL |