Gene
| Gene Model ID | pfu_aug2.0_182.1_07120 |
|---|---|
| Locus | scaffold182.1 : 271824 ... 316894 : - |
| To GenomeBrowser | scaffold182.1:271824..316894 |
| Genes list of scaffold | scaffold182.1 |
| Synonym | pfu_aug1.0_3007.1_44541 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_182.1_07120.t1 | 1 | 1 | RhoGAP | 449 | 595 | 2.3e-32 | 111.6 | 6.7e-36 | 5.0e-32 | 110.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_182.1_07120.t1 | gi|585698925|ref|XP_006822669.1| | PREDICTED: uncharacterized protein LOC100372589 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_182.1_07120.t1 | gi|260789546|ref|XP_002589807.1| | hypothetical protein BRAFLDRAFT_125910 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_182.1_07120.t1 | gi|390351033|ref|XP_003727557.1| | PREDICTED: rho GTPase-activating protein 20 isoform X3 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_182.1_07120.t1 | gi|390351035|ref|XP_003727558.1| | PREDICTED: rho GTPase-activating protein 20 isoform X4 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_182.1_07120.t1 | gi|662203603|ref|XP_008475147.1| | PREDICTED: rho GTPase-activating protein 20-like [Diaphorina citri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_182.1_07120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_182.1_07120.t1 atggtagatgcatttaattgtcgagacgatttctatgttaaactcttatcaaaggcctttgttgagcaagaacttgaaga agacacgatacaggtccagagaatcccagaatatgataagtacctacatgaactcctggaggacacggatcccgaccatc cggattttgaagacctcagcaaggctgccagccgctcacagaaaatggtgagagagcatgaagatgaactggggactaat acagataacgtcaaaatggacagaattcaacagagatttccgaacgatgaccttcaacttagagactctacgccacagaa ctgtagatccctttctaccaggaggaagtcggcccctggggcagtgctttttaaaactctgggaaagtctaaaagttctt caaacttatggtcagcgggtaataattccggacacaagagagacatggatatggtcagtccaatacgacaacacagcaac aataaccggcagtttatactggaaggcccagtagaattcgccactggtttgcaacgtcaagatagatacctcttcctttt caacgacttgttactggtagccaaacaaaaatcaagtaccacattcaagttgaagaaccgtgttcgggtttgtgagatgt ggacaggggattgcttggatgaggtgtccgaatgtacggtgccacctgataaatcatttgttgtggggtggcccaccacc aacgtggtagccacattcaaatctgtggaactgaaagacttgtggctcaataaaatcactgagaccatagactatgagcg tatgagagaatgcaataagactcttacaatcatggtgatgtgcaaagaaatcaatcagtgccaccctttgaatgtggata gcaataaaacgacaaaagaggtattactggaggctatagaaaagtttggcataccggttgaaatgaaagcagatatacac gtgatgctaagtaaacgtgacctagaaaccgggttgaccatgacacgcnccggtcacgagctacctcatgccatccgagc cagcgagctgagggatcttgcccacacagacgaccccacggtatccctggatctggagcagaaatttgatgaaagcagta gcccggataaaagtcctggatttatgctgaaaatcaaaacgaagttcgctcgcaagtccagctatgaagatgggagcaag gtcaaggagacgaagaagtccaagctcagactgcctttcaggaagaataaagatgacaaaaataacaacaagaccccagg gaccccctccccggggattctatacggccgacccctccacgaggtcatggaagacggtgaactccctaaacccattatgg acatgatgagggtcatatttttgcgcggtcctttcaaagaggggatcctgaggaagagttcgagcaagactcgcattgag gacttccataggaggatcgatagcggggaggaggatgtcataatggaggacaccgatcctctcttggctgggtgcttact caaagaatacctccgaagtcttccgaattgtttattatgtgggaatctctatcccgaatggaaaaagttagatggggagg aggacacaccagagaaattcaatagagtccatgacttactgtgcacaatcccgacggaaaacttggactttttaagacat ttgttatgtgttttgtaccacatttcacaaaagaaagataggaacaaaatggacgctcgtaacttagcagtgtgcatagc acctagtattctttacgaacaaagagaggacttaaaaagtaccaagaagaaggacttggccttgtcgaactactccaaac ctctttttcctcttgtgcaatatatgatagagaactgcgctgaacttttaggagagaatgtgctatatttattcggggat gcccccgaggaaccccttccagaacccaaactacgacacgacagtagcggaaccgacagtgatagctgtcacagtattat ggattctgcaagtggtagccactccatagacagtctggagaaggacatttatatgggagagagagatcccagcccccatc caagactgaatcatatctccccttcaggactgagtaaagattccggtcactatagttcacaggaagctctggacattaag aatgattttgaaattcagatgccgagagcacgtgatgcgttagtacgtcaaaggccagttatagagaacactccccccgc ttcaccacatagtagttcagtggacagtttactcaccgattctacgggttcattcattacaaatcgtcagttcagtagag atacggagacaagtgactcatactacacagccgaggaaagtgttcgagattcgttcgactcgcatgatggtgtggattta cacccgttgaacttcttagtgggaaatattcacgggaaaaatgttcaaagcagaaatttttcgcctcccacgtcgccgaa aaatgttcgcaaattgcatcccgatgaaatgcatcagaatttatcgggacgccgttcacttcctctccctttgacgattc cgtcatttgacactcctaggagtcagatatcctcacggatcgggcatagtgctatggatttatcgggttcttccagtggt ccttcgatgaagcaaatatcgaagtataatctgggacttgcaacctctccaccacctcgtgttattctgaaacaaatgaa gcagttgtctatgcagagacaagacaattcgaacactcccatgcgtgctagtcttgatagtgctattttatcccaagtga atgaatcggaaaattaccgtagtgaactgaaagtatccaaactccacagcaatacaccaaagtcagaaaaggacagttca aatagtgtcagtaaatcgaacactcccgaacggtcgccgaagtcacgacccgaaaagccgccgtcttacgacgaggccgt caaaaggaaatttatgattaagaacggtcttccattagagatatcagaacaagatatccagcgagaaaaagaggcacagc tgaaagcgaaattgatatacgaggaatcgctaaaacgattccaagaaacgacgcggatcccggaggattcagaaagtgaa tctgacgagagtgacgatcaaattgtcaatgataacgatgtgtatgtggcactaagaaatgtcaaagaccctcgtaaagt ttacgaagaatccatgaaaattttcgaacaacaaggaaaaaggactccatctccctatcgggagaaacgaccgtcacctc cctcccaagggagagctcccgacagcgaacatttatcagttccaaagtgcaatttacaccgttctcatagtgactctacc gagcatgcgaacaaagccgagtattttcgaaagagagacgcttctccgagagcgagactgcatcagtctcccgatcggga gaattcgccatcaacgagattagagtattcttcgtctagtgtttctaatagttcctcagatactgtgactgatacgcaac aaatttctccctaccagcgggagcgttcggaatctagtccggtcattgagcgtcaccgatttccaacgacttcttcaacc tctgcatttaatgctcatagatcccctcatactagtgctcaatattcagactcacgttactccaactcgcgctatagtaa ctcgcgagtttcgcggagtgtggacactacagtaagagaccgcgaaattccacgacgggaatccccgtcacgtagttatc ctagagacatctctgccgatgccgtacaaacttctcggagatttgaatacagtttgtcgaaaagttcaaacttctcttcg gaaagttcgagtactcagtcatctagagacaatagcagaagttctacgccatcaagagatccgtcttacggaaggaaaac cgcgtccagtgctgtttcaaaatcacaagacttgccgtggagtgtgaaaagtttgaaacaaatctacgatcacagcggat caactagtaaaggcaatatgagcagtgctgggtcacgacccccgccccctccctaccaacctccgcctccctttcgaaga ccggactcgtcacgcttgagttcttcgagtcagagcagtgtagggagtggaagcacggggaggagtaccccgcccacaaa ggtttccccaacccagcggcgtaccgggggaccacagacagtgaactatgactcagatggcgtatcatacgtatag |
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Protein
| Protein ID | pfu_aug2.0_182.1_07120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_182.1_07120.t1 MVDAFNCRDDFYVKLLSKAFVEQELEEDTIQVQRIPEYDKYLHELLEDTDPDHPDFEDLSKAASRSQKMVREHEDELGTN TDNVKMDRIQQRFPNDDLQLRDSTPQNCRSLSTRRKSAPGAVLFKTLGKSKSSSNLWSAGNNSGHKRDMDMVSPIRQHSN NNRQFILEGPVEFATGLQRQDRYLFLFNDLLLVAKQKSSTTFKLKNRVRVCEMWTGDCLDEVSECTVPPDKSFVVGWPTT NVVATFKSVELKDLWLNKITETIDYERMRECNKTLTIMVMCKEINQCHPLNVDSNKTTKEVLLEAIEKFGIPVEMKADIH VMLSKRDLETGLTMTRXGHELPHAIRASELRDLAHTDDPTVSLDLEQKFDESSSPDKSPGFMLKIKTKFARKSSYEDGSK VKETKKSKLRLPFRKNKDDKNNNKTPGTPSPGILYGRPLHEVMEDGELPKPIMDMMRVIFLRGPFKEGILRKSSSKTRIE DFHRRIDSGEEDVIMEDTDPLLAGCLLKEYLRSLPNCLLCGNLYPEWKKLDGEEDTPEKFNRVHDLLCTIPTENLDFLRH LLCVLYHISQKKDRNKMDARNLAVCIAPSILYEQREDLKSTKKKDLALSNYSKPLFPLVQYMIENCAELLGENVLYLFGD APEEPLPEPKLRHDSSGTDSDSCHSIMDSASGSHSIDSLEKDIYMGERDPSPHPRLNHISPSGLSKDSGHYSSQEALDIK NDFEIQMPRARDALVRQRPVIENTPPASPHSSSVDSLLTDSTGSFITNRQFSRDTETSDSYYTAEESVRDSFDSHDGVDL HPLNFLVGNIHGKNVQSRNFSPPTSPKNVRKLHPDEMHQNLSGRRSLPLPLTIPSFDTPRSQISSRIGHSAMDLSGSSSG PSMKQISKYNLGLATSPPPRVILKQMKQLSMQRQDNSNTPMRASLDSAILSQVNESENYRSELKVSKLHSNTPKSEKDSS NSVSKSNTPERSPKSRPEKPPSYDEAVKRKFMIKNGLPLEISEQDIQREKEAQLKAKLIYEESLKRFQETTRIPEDSESE SDESDDQIVNDNDVYVALRNVKDPRKVYEESMKIFEQQGKRTPSPYREKRPSPPSQGRAPDSEHLSVPKCNLHRSHSDST EHANKAEYFRKRDASPRARLHQSPDRENSPSTRLEYSSSSVSNSSSDTVTDTQQISPYQRERSESSPVIERHRFPTTSST SAFNAHRSPHTSAQYSDSRYSNSRYSNSRVSRSVDTTVRDREIPRRESPSRSYPRDISADAVQTSRRFEYSLSKSSNFSS ESSSTQSSRDNSRSSTPSRDPSYGRKTASSAVSKSQDLPWSVKSLKQIYDHSGSTSKGNMSSAGSRPPPPPYQPPPPFRR PDSSRLSSSSQSSVGSGSTGRSTPPTKVSPTQRRTGGPQTVNYDSDGVSYV |
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