Gene
| Gene Model ID | pfu_aug2.0_184.1_13745 |
|---|---|
| Locus | scaffold184.1 : 85976 ... 92398 : + |
| To GenomeBrowser | scaffold184.1:85976..92398 |
| Genes list of scaffold | scaffold184.1 |
| Synonym | pfu_aug1.0_19590.1_04015 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_184.1_13745.t1 | 1 | 1 | CENP-B_N | 41 | 92 | 5.1e-10 | 38.6 | 6.1e-13 | 9.1e-10 | 37.8 |
| pfu_aug2.0_184.1_13745.t1 | 2 | 1 | HTH_28 | 51 | 86 | 5.4e-06 | 26.2 | 1.5e-08 | 2.2e-05 | 24.3 |
| pfu_aug2.0_184.1_13745.t1 | 2 | 1 | HTH_Tnp_Tc5 | 110 | 173 | 2.0e-16 | 59.5 | 4.2e-19 | 6.3e-16 | 57.9 |
| pfu_aug2.0_184.1_13745.t1 | 2 | 2 | HTH_28 | 251 | 264 | 5.4e-06 | 26.2 | 2.7 | 4000.0 | -2.1 |
| pfu_aug2.0_184.1_13745.t1 | 2 | 2 | HTH_Tnp_Tc5 | 303 | 314 | 2.0e-16 | 59.5 | 5.6 | 8400.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_184.1_13745.t1 | gi|562842645|ref|XP_006150378.1| | PREDICTED: tigger transposable element-derived protein 4 [Tupaia chinensis] | 2.0e-24 |
| pfu_aug2.0_184.1_13745.t1 | gi|542155203|ref|XP_005486436.1| | PREDICTED: tigger transposable element-derived protein 4 [Zonotrichia albicollis] | 5.0e-24 |
| pfu_aug2.0_184.1_13745.t1 | gi|507676587|ref|XP_004638755.1| | PREDICTED: tigger transposable element-derived protein 4 [Octodon degus] | 7.0e-24 |
| pfu_aug2.0_184.1_13745.t1 | gi|543244873|ref|XP_005415767.1| | PREDICTED: tigger transposable element-derived protein 4 [Geospiza fortis] | 7.0e-24 |
| pfu_aug2.0_184.1_13745.t1 | gi|694862205|ref|XP_009473002.1| | PREDICTED: tigger transposable element-derived protein 4 [Nipponia nippon] | 7.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_184.1_13745.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_184.1_13745.t1 atgacagaattccagaatcctgtaggcagcctaggtgagcaatccagtgaaggacccaggtctcatccaggggggataac tggatcaccggccgctacagtgcagaagaagggtacgaagagaaagctggatctaaagacttatgagacaaagtacgatg ccatcatggaggttgagagggggtccttgtcaaagaaacaggtcgctgaaaagtttgccatatccgcttcaacgctctca acatggctgaaaaacgccgactctattaaagagaaggttacagccagtaatgttgagcctcaacgcaaaaagaacagagt ggccaagtttcctgaagtcgaggacgcactcttaaaatggtttgcaaatgccagaacccataacgtgacagtctcagggg agatgatgcgagagaaggccagagacttcgcactcaaactgggagttccagactccaagttcgaatgttcagttggttgg ctagagcgatttaaagccaggcacgccatagtctttaaaagggtcgccgagtccatagatgatgatgacgacgacgatcc agacgatgatttaccactggcaagtctcatgaacgtcgctccagtcgtctcaatgagtgactttgtagctgcagacgatg atgtaccgacgtgcgccgacctcggcgacgacgatatcatcgaggggatcgtctccgccagaaatggcaacgacgacgag agtgacgatgaggaaccagcgcaaccaccaacccgaccaacaatctacagtgccgtagttgcctttgacaccctgaggtc cttttttgacgcacacaacggcggagatcgagtgaaccaagccctagccgatctcaactccatgttggtcgacgcccacc ggacgaagatgtatactcggcagacagcaatgaccgattacgtgaagcagacagacagagcagaggggccgagagggtga |
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Protein
| Protein ID | pfu_aug2.0_184.1_13745.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_184.1_13745.t1 MTEFQNPVGSLGEQSSEGPRSHPGGITGSPAATVQKKGTKRKLDLKTYETKYDAIMEVERGSLSKKQVAEKFAISASTLS TWLKNADSIKEKVTASNVEPQRKKNRVAKFPEVEDALLKWFANARTHNVTVSGEMMREKARDFALKLGVPDSKFECSVGW LERFKARHAIVFKRVAESIDDDDDDDPDDDLPLASLMNVAPVVSMSDFVAADDDVPTCADLGDDDIIEGIVSARNGNDDE SDDEEPAQPPTRPTIYSAVVAFDTLRSFFDAHNGGDRVNQALADLNSMLVDAHRTKMYTRQTAMTDYVKQTDRAEGPRG |
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