Gene
| Gene Model ID | pfu_aug2.0_1847.1_25174 |
|---|---|
| Locus | scaffold1847.1 : 5866 ... 15998 : + |
| To GenomeBrowser | scaffold1847.1:5866..15998 |
| Genes list of scaffold | scaffold1847.1 |
| Synonym | pfu_aug1.0_4564.1_08938 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| proteasome subunit alpha type-6 | GO:0000932 GO:0003723 GO:0004298 GO:0005844 GO:0006511 GO:0016363 GO:0019773 GO:0051059 GO:0051092 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1847.1_25174.t1 | 1 | 1 | Proteasome | 12 | 118 | 1.1e-31 | 109.6 | 1.6e-35 | 1.2e-31 | 109.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1847.1_25174.t1 | gi|556955581|ref|XP_005989234.1| | PREDICTED: proteasome subunit alpha type-6 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1847.1_25174.t1 | gi|532073955|ref|XP_005322784.1| | PREDICTED: proteasome subunit alpha type-6 [Ictidomys tridecemlineatus] | 0.0 |
| pfu_aug2.0_1847.1_25174.t1 | gi|602662239|ref|XP_007436765.1| | PREDICTED: proteasome subunit alpha type-6 [Python bivittatus] | 0.0 |
| pfu_aug2.0_1847.1_25174.t1 | gi|126283549|ref|XP_001363110.1| | PREDICTED: proteasome subunit alpha type-6 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_1847.1_25174.t1 | gi|213021130|ref|NP_001132918.1| | proteasome subunit alpha type-6 [Ovis aries] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1847.1_25174.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1847.1_25174.t1 atgctaattgaatatgcattcaaagctattaatcaagggggactcacatctgtggccatcaggggaaaagactgtgcagt tgttgtaacacagaaaaaagtgccagacaagctgttagatgctggtacagtcacacatttgttccgactcacggagaatc ttggatgtgtaatgacagggatggtcgccgacagtcgatctcaggtgcagcgagccaggtatgaggcagccaagtggaag tacaattatggttacgagatccccgtagatatactgtgtaaaaggatagcggatatatctcaggtctacactcagagtgc agagatgagacctttgggttgtagtaagttgatttaa |
|
Protein
| Protein ID | pfu_aug2.0_1847.1_25174.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1847.1_25174.t1 MLIEYAFKAINQGGLTSVAIRGKDCAVVVTQKKVPDKLLDAGTVTHLFRLTENLGCVMTGMVADSRSQVQRARYEAAKWK YNYGYEIPVDILCKRIADISQVYTQSAEMRPLGCSKLI |
|