Gene
| Gene Model ID | pfu_aug2.0_1847.1_25175 |
|---|---|
| Locus | scaffold1847.1 : 23896 ... 68237 : + |
| To GenomeBrowser | scaffold1847.1:23896..68237 |
| Genes list of scaffold | scaffold1847.1 |
| Synonym | pfu_aug1.0_20643.1_04097 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor syf1 | GO:0005634 GO:0006397 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1847.1_25175.t2 | gi|32451897|gb|AAH54579.1| | XPA binding protein 2 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1847.1_25175.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1847.1_25175.t1 atggcgggagccaaaccgggagttcacgtagtgttattgaagccaatagctgttccagagactttgattaaaggaaacaa attcataaaatgggacgagagctcacagaccgggacccctgtcacgttgaaggtggaccccaaaggttacattctgtact ggaaagaccaaaacaagacatcttaccatgaaggctcagatatggacttcttggatatctcactgatcagggacacaagg actggaaagtatgccaaagtaccaaaggaagggaagttacgggacaattgtatgatcggacagattgacacacctctgga agaaaagaccgtgacgatctgctatggaaaagacatgacaaacatagaatttgtcaactttgtttgtggtagtcgtgagg tagccagggaatggacagatgaactactgagttacgccaccaatctccttgctttgaatggaagtgttttatcatacttg gaaaaagcccatactaaactaactcacgtacttgatgtcaacggccgcattcctgtcaggaatatcatcaaaatggtagc atcacacagagacgacaaacgcagggtggaaaaagctttggaatccgtcggttttatggctggaaagaaacctgataaaa agccagggtcactatttgatagtgatccctttgctcctcagtccccagccaaatcttcctcccctgctccatcattacct cccaaatccaagaagcagcctccccccaggccagccccacccaagtcccgaccaacaccaagtcctagtcaacaacccga taaaggattcggagcattcgactctgatccatttggagaaagtgattcttttactagttcaggagggaaagaagtagcac agggactgtgtcatatacaatatcaagactttgtgttacagaaagaggaaaatgacctaccttatgaggaagaaatctta agaaatccttactctgtgaagtcttggttgaggtatatagagttcaagaaagatgctcccagaaatgttgtcaatctgat atacgagcgagccctgaaagagctacccggcagttataagttatggtataactacctgaggttacgacgcaggcaggtca aaggtcgatgtatcaatgacccagccattgaagatgtcaataatgcccatgaaagagctcttgttttcatgcacaagatg ccaaggatctggctggattattgtcagtttctagtggaccagagtaaaatcaccaagaccagacgaacgtttgaccgcgc ccttcgtgctctacccattacacagcatcacagaatatggccactgtatctgaagtttgccagactttacgacttgccag aaacagccgtcagaatctacagacgccatcttaagcttcaaaaagaaaacacagaggagtacattgaatatttgatgaag ataggatggttagatgaagcagcaaatcgacttactgacatcataaacgacgataattttgtttcaaaggagggcaagtc aaaacatcagctttggaatgaattatgtgaacttattgccaagaatccagacaaggtaacaagtatgaacatcgagccaa ttatacgtcagggattaaagcgatacacggaccagataggtgtcttatggatctctatggctgactattatgtcagggga ggccactttgacaggaatgagaccattgatccaggaaagttcacatttgaagacttcttcaacttttaccgtcatcttgt gggtagaacagaggtggacaaagtatttgatgaagtccaatcacatttattactgagccgcgtctgcggcgagtggggct aa |
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| Transcript ID | pfu_aug2.0_1847.1_25175.t2 |
| Definition | - |
>pfu_aug2.0_1847.1_25175.t2 atggcgggagccaaaccgggagttcacgtagtgttattgaagccaatagctgttccagagactttgattaaaggaaacaa attcataaaatgggacgagagctcacagaccgggacccctgtcacgttgaaggtggaccccaaaggttacattctgtact ggaaagaccaaaacaaggatatggacttcttggatatctcactgatcagggacacaaggactggaaagtatgccaaagta ccaaaggaagggaagttacgggacaattgtatgatcggacagattgacacacctctggaagaaaagaccgtgacgatctg ctatggaaaagacatgacaaacatagaatttgtcaactttgtttgtggtagtcgtgaggtagccagggaatggacagatg aactactgagttacgccaccaatctccttgctttgaatggaagtgttttatcatacttggaaaaagcccatactaaacta actcacgtacttgatgtcaacggccgcattcctgtcaggaatatcatcaaaatggtagcatcacacagagacgacaaacg cagggtggaaaaagctttggaatccgtcggttttatggctggaaagaaacctgataaaaagccagggtcactatttgata gtgatccctttgctcctcagtccccagccaaatcttcctcccctgctccatcattacctcccaaatccaagaagcagcct ccccccaggccagccccacccaagtcccgaccaacaccaagtcctagtcaacaacccgataaaggattcggagcattcga ctctgatccatttggagaaagtgattcttttactagttcaggagggaaagaagtagcacagggactgtgtcatatacaat atcaagactttgtgttacagaaagaggaaaatgacctaccttatgaggaagaaatcttaagaaatccttactctgtgaag tcttggttgaggtatatagagttcaagaaagatgctcccagaaatgttgtcaatctgatatacgagcgagccctgaaaga gctacccggcagttataagttatggtataactacctgaggttacgacgcaggcaggtcaaaggtcgatgtatcaatgacc cagccattgaagatgtcaataatgcccatgaaagagctcttgttttcatgcacaagatgccaaggatctggctggattat tgtcagtttctagtggaccagagtaaaatcaccaagaccagacgaacgtttgaccgcgcccttcgtgctctacccattac acagcatcacagaatatggccactgtatctgaagtttgccagactttacgacttgccagaaacagccgtcagaatctaca gacgccatcttaagcttcaaaaagaaaacacagaggagtacattgaatatttgatgaagataggatggttagatgaagca gcaaatcgacttactgacatcataaacgacgataattttgtttcaaaggagggcaagtcaaaacatcagctttggaatga attatgtgaacttattgccaagaatccagacaaggtaacaagtatgaacatcgagccaattatacgtcagggattaaagc gatacacggaccagataggtgtcttatggatctctatggctgactattatgtcaggggaggccactttgacaggaatgag accattgatccaggaaagttcacatttgaagacttcttcaacttttaccgtcatcttgtgggtagaacagaggtggacaa agtatttgatgaagtccaatcacatttattactgagccgcgtctgcggcgagtggggctaa |
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Protein
| Protein ID | pfu_aug2.0_1847.1_25175.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1847.1_25175.t1 MAGAKPGVHVVLLKPIAVPETLIKGNKFIKWDESSQTGTPVTLKVDPKGYILYWKDQNKTSYHEGSDMDFLDISLIRDTR TGKYAKVPKEGKLRDNCMIGQIDTPLEEKTVTICYGKDMTNIEFVNFVCGSREVAREWTDELLSYATNLLALNGSVLSYL EKAHTKLTHVLDVNGRIPVRNIIKMVASHRDDKRRVEKALESVGFMAGKKPDKKPGSLFDSDPFAPQSPAKSSSPAPSLP PKSKKQPPPRPAPPKSRPTPSPSQQPDKGFGAFDSDPFGESDSFTSSGGKEVAQGLCHIQYQDFVLQKEENDLPYEEEIL RNPYSVKSWLRYIEFKKDAPRNVVNLIYERALKELPGSYKLWYNYLRLRRRQVKGRCINDPAIEDVNNAHERALVFMHKM PRIWLDYCQFLVDQSKITKTRRTFDRALRALPITQHHRIWPLYLKFARLYDLPETAVRIYRRHLKLQKENTEEYIEYLMK IGWLDEAANRLTDIINDDNFVSKEGKSKHQLWNELCELIAKNPDKVTSMNIEPIIRQGLKRYTDQIGVLWISMADYYVRG GHFDRNETIDPGKFTFEDFFNFYRHLVGRTEVDKVFDEVQSHLLLSRVCGEWG |
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| Protein ID | pfu_aug2.0_1847.1_25175.t2 |
| Definition | - |
>pfu_aug2.0_1847.1_25175.t2 MAGAKPGVHVVLLKPIAVPETLIKGNKFIKWDESSQTGTPVTLKVDPKGYILYWKDQNKDMDFLDISLIRDTRTGKYAKV PKEGKLRDNCMIGQIDTPLEEKTVTICYGKDMTNIEFVNFVCGSREVAREWTDELLSYATNLLALNGSVLSYLEKAHTKL THVLDVNGRIPVRNIIKMVASHRDDKRRVEKALESVGFMAGKKPDKKPGSLFDSDPFAPQSPAKSSSPAPSLPPKSKKQP PPRPAPPKSRPTPSPSQQPDKGFGAFDSDPFGESDSFTSSGGKEVAQGLCHIQYQDFVLQKEENDLPYEEEILRNPYSVK SWLRYIEFKKDAPRNVVNLIYERALKELPGSYKLWYNYLRLRRRQVKGRCINDPAIEDVNNAHERALVFMHKMPRIWLDY CQFLVDQSKITKTRRTFDRALRALPITQHHRIWPLYLKFARLYDLPETAVRIYRRHLKLQKENTEEYIEYLMKIGWLDEA ANRLTDIINDDNFVSKEGKSKHQLWNELCELIAKNPDKVTSMNIEPIIRQGLKRYTDQIGVLWISMADYYVRGGHFDRNE TIDPGKFTFEDFFNFYRHLVGRTEVDKVFDEVQSHLLLSRVCGEWG |
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