Gene
| Gene Model ID | pfu_aug2.0_1866.1_21828 |
|---|---|
| Locus | scaffold1866.1 : 32976 ... 51949 : + |
| To GenomeBrowser | scaffold1866.1:32976..51949 |
| Genes list of scaffold | scaffold1866.1 |
| Synonym | pfu_aug1.0_40015.1_26911 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| beta-1 subunit of nicotinic acetylcholine | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1866.1_21828.t1 | 2 | 1 | Neur_chan_LBD | 42 | 249 | 0.0 | 182.6 | 0.0 | 0.0 | 181.7 |
| pfu_aug2.0_1866.1_21828.t1 | 1 | 1 | Neur_chan_memb | 258 | 461 | 4.4e-22 | 79.1 | 8.7e-23 | 4.3e-19 | 69.3 |
| pfu_aug2.0_1866.1_21828.t1 | 2 | 2 | Neur_chan_LBD | 361 | 376 | 0.0 | 182.6 | 1.4 | 7000.0 | -4.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1866.1_21828.t1 | gi|526117373|ref|NP_001267752.1| | neuronal acetylcholine receptor subunit alpha-9-like precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_1866.1_21828.t1 | gi|380012495|ref|XP_003690316.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1866.1_21828.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1866.1_21828.t1 atgaaggtaccacgccttttgcaccattggagattatgtcctttcattctatggactttatgttttctgttgctaagtag tgtttccatcctgggatatgaacataagcctacacttaaggacgaatctcagctaatagaggatctaacgaggaattaca acccaatagtacgtcccatcaacgccaccaattctatcaacgttattgctctaggcctctccatgatagacatagcagaa ttacatgaaaaagaagagatattcgaaactggagcattcctgcagcatttgtggtcagatcccagactgaagtgggagcc ctccaaatatggtggcctaactgatgttcacatacctgcatctctcatttggaaacctgatataacactgataaataatg ccgatacagttatggagaaggttgaacctctcgtcattatattccatttaggaacagtattctacagtcctcaatataga cttagggctccatgtcaaatggacctttcaaaattcccattcgatgaacagaactgtttcttgttgtttggttcttggac gtatgacaattctcgtataaatctaacacactttgtcaacggtaagaaaggacttgacatgaaagattttaggatgaata aagagtggaaagtgttagagacgcagacaacacggatagacaaacattatgagatgggaaataacaaagtccctctgata aagtatgaatttaaattgaagaggaactctgtttattatactcatgtatttattctaccatcagtattattagctgttct agtgccattccagtttatgcttccaccagattcaaaagagcgaatatcactaggagcgaccctgttgctgagcctaatat tccttttatccatgcttcaagaatttcttccagaagcgcatcctaatgttcctactctagccagctactacacggtaact atgatatggatcaccctttctcttctcgcttctatctggatcatcaatattcagtcaaggggacccagaagacagaaggt gccagtgttcatacgacattttttccttagggggctgaagcgtctagtatgtttgggtgaagatacctactacccactag atgagatggagacgatatccatgagaggtttggatagagctgtagatggcaatgtgagacagcagactgagattaccagc cagaacaaactggagcgtgacgtagaggaaatactccgtcacgtgcacactctgaccctacgcagtacagtcatagaggc aaggcacgaaatacggaatgagtggcaccaagtggctctcgttttagacagacttttgtgtttcctgtttgctatgacat tccttctttatacttttgtcttattggcgtaa |
|
Protein
| Protein ID | pfu_aug2.0_1866.1_21828.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1866.1_21828.t1 MKVPRLLHHWRLCPFILWTLCFLLLSSVSILGYEHKPTLKDESQLIEDLTRNYNPIVRPINATNSINVIALGLSMIDIAE LHEKEEIFETGAFLQHLWSDPRLKWEPSKYGGLTDVHIPASLIWKPDITLINNADTVMEKVEPLVIIFHLGTVFYSPQYR LRAPCQMDLSKFPFDEQNCFLLFGSWTYDNSRINLTHFVNGKKGLDMKDFRMNKEWKVLETQTTRIDKHYEMGNNKVPLI KYEFKLKRNSVYYTHVFILPSVLLAVLVPFQFMLPPDSKERISLGATLLLSLIFLLSMLQEFLPEAHPNVPTLASYYTVT MIWITLSLLASIWIINIQSRGPRRQKVPVFIRHFFLRGLKRLVCLGEDTYYPLDEMETISMRGLDRAVDGNVRQQTEITS QNKLERDVEEILRHVHTLTLRSTVIEARHEIRNEWHQVALVLDRLLCFLFAMTFLLYTFVLLA |
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