Gene
| Gene Model ID | pfu_aug2.0_1871.1_05290 |
|---|---|
| Locus | scaffold1871.1 : 88545 ... 97925 : - |
| To GenomeBrowser | scaffold1871.1:88545..97925 |
| Genes list of scaffold | scaffold1871.1 |
| Synonym | pfu_aug1.0_8058.1_17232 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1871.1_05290.t1 | 2 | 1 | RNase_T | 234 | 277 | 7.7e-07 | 29.5 | 0.8 | 3000.0 | -1.7 |
| pfu_aug2.0_1871.1_05290.t1 | 2 | 2 | RNase_T | 326 | 471 | 7.7e-07 | 29.5 | 8.3e-10 | 3.1e-06 | 27.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1871.1_05290.t1 | gi|499027745|ref|XP_004564604.1| | PREDICTED: three-prime repair exonuclease 1 [Maylandia zebra] | 8.0e-28 |
| pfu_aug2.0_1871.1_05290.t1 | gi|585720954|ref|XP_006813181.1| | PREDICTED: uncharacterized protein LOC102808737, partial [Saccoglossus kowalevskii] | 4.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_1871.1_05290.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1871.1_05290.t1 atgatggcagaggtagatttcaaagtgaagaaaagcaaaactgaaatcggatgcatgcccttatatcatgctggcattgg agatgagacaatcgagaagattttcgccgtcctaaacatcccctgcatatctcactctaacctaaaggtacaagagagga aggttgaccatgccattgagaagattgcccaggactcctgtaatactgctttggaacgtgaagtccaagaatcaagtgaa ggtctctgtgtatcatttgatgcaggctggcagaaacgtggaagtggtagaaattacaacagtctctcagggcacagctc catgtatggttgtcaaacaaataaacttatcggatatgatgtgatgtgcaagtcctgtatgatatgtgatgaacctgcaa aaaagggagacaattatccacgtgagcatgactgcaggaaaaactggggaggaagtgctaaaggaatggaacatgcaatg gctgtcaatatcatcaagaacatacatgacaaaggacacacagtgaaacagctggctatggatgatgatgcaaccaccat ttcaaaagtccacaatgaaattgacattgacattgaaaagctcagtgataaaaatcataacttgaaaaactttaccaatt ctctgtattgccttcagaaagaacacaagcttcaaaagacaaataaagaactggtactttctccagggaaacataccaaa caatatgttgaaaagaaagagaggaaacgggccagagaagagtccatgaggcagaccagggaattcaaacgaagacgtag agaactaaaaagcactgaaacgaggaaaacaagggcatccgaaatacgagaaggagtcacgtatcaaacgaatgttgata atgatggatatgcaaagtcggctactgaagaaattccaccaccaccagtaactccacatgaagtgccactgcagcgaaag gaatacactcgtatttattttgacttggaaaccactggtctaggactacatgtatcagacatcacacagatatctgctgt ttacaagaccacagagttctccatgtatgtaattccagaatcacctatacaagcttccgcatcaagggtcacaggactga catatgatggtaccacaatgttcaagaatggcataccagttccctgtcatcctcttcaacatgcgctagaagagttcaac acatggctgcagcaatttgacaatcctcttttatttgctcataatgcaaaaaagtttgatagtcgtgtgttatgttacgc cataaacaaagtgaatgatgcaaaactagtagacagcatctgtggtttctgtgatacattactactatgtaaagatgttt taccaggtcatgactcttatagtcaggaaaacttagtaaaaaatgtgttacatttggagtattatgctcatacgaaagct aattag |
|
Protein
| Protein ID | pfu_aug2.0_1871.1_05290.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1871.1_05290.t1 MMAEVDFKVKKSKTEIGCMPLYHAGIGDETIEKIFAVLNIPCISHSNLKVQERKVDHAIEKIAQDSCNTALEREVQESSE GLCVSFDAGWQKRGSGRNYNSLSGHSSMYGCQTNKLIGYDVMCKSCMICDEPAKKGDNYPREHDCRKNWGGSAKGMEHAM AVNIIKNIHDKGHTVKQLAMDDDATTISKVHNEIDIDIEKLSDKNHNLKNFTNSLYCLQKEHKLQKTNKELVLSPGKHTK QYVEKKERKRAREESMRQTREFKRRRRELKSTETRKTRASEIREGVTYQTNVDNDGYAKSATEEIPPPPVTPHEVPLQRK EYTRIYFDLETTGLGLHVSDITQISAVYKTTEFSMYVIPESPIQASASRVTGLTYDGTTMFKNGIPVPCHPLQHALEEFN TWLQQFDNPLLFAHNAKKFDSRVLCYAINKVNDAKLVDSICGFCDTLLLCKDVLPGHDSYSQENLVKNVLHLEYYAHTKA N |
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