Gene
| Gene Model ID | pfu_aug2.0_188.1_27010 |
|---|---|
| Locus | scaffold188.1 : 288985 ... 304800 : - |
| To GenomeBrowser | scaffold188.1:288985..304800 |
| Genes list of scaffold | scaffold188.1 |
| Synonym | pfu_aug1.0_3952.1_44833 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_188.1_27010.t1 | 1 | 1 | CENP-M | 17 | 170 | 3.8e-25 | 88.1 | 3.0e-29 | 4.4e-25 | 87.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_188.1_27010.t1 | gi|585711190|ref|XP_006824697.1| | PREDICTED: centromere protein M-like [Saccoglossus kowalevskii] | 4.0e-20 |
| pfu_aug2.0_188.1_27010.t1 | gi|390357116|ref|XP_791057.3| | 1.0e-17 | |
| pfu_aug2.0_188.1_27010.t1 | gi|260801733|ref|XP_002595750.1| | hypothetical protein BRAFLDRAFT_117555 [Branchiostoma floridae] | 2.0e-14 |
| pfu_aug2.0_188.1_27010.t1 | gi|754346907|ref|XP_004363684.2| | hypothetical protein CAOG_03956 [Capsaspora owczarzaki ATCC 30864] | 4.0e-12 |
| pfu_aug2.0_188.1_27010.t1 | gi|632987151|ref|XP_007910633.1| | PREDICTED: centromere protein M [Callorhinchus milii] | 6.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_188.1_27010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27010.t1 atgatgccaactgattttgaatttcagagaccaaaggtcaatgtcactgcaggaaatgagttagtaggtgcagagttagt tgggaagcatacctttgccaaggctttacttcaagcaagcacttttcctcttcgaatttgtaaaaccctacagctgccca tcgataacatagaggagaatgaccgacctcactttattgtttacatggtggatctgacctgcagggagagcctgaagata gtagagaattcattgcagtgtgtagatggtaaacagtatgctgggaaaacatgtatagtcgctctaaaagtgaagtgtcc tgagagaagagcttttgatttggatgccttaacaaatttagctcatcgacattactgtgaagtttattatggcagtttgg agactgagatggagaaagacgttctggccaaacagattatacgtgttagtgaaatagcgtgtggacaaaaacacaatgtg actccattattagtagaaagtacaaaatggttttcagaacagtattttttgtaa |
|
Protein
| Protein ID | pfu_aug2.0_188.1_27010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27010.t1 MMPTDFEFQRPKVNVTAGNELVGAELVGKHTFAKALLQASTFPLRICKTLQLPIDNIEENDRPHFIVYMVDLTCRESLKI VENSLQCVDGKQYAGKTCIVALKVKCPERRAFDLDALTNLAHRHYCEVYYGSLETEMEKDVLAKQIIRVSEIACGQKHNV TPLLVESTKWFSEQYFL |
|