Gene
| Gene Model ID | pfu_aug2.0_188.1_27011 |
|---|---|
| Locus | scaffold188.1 : 305793 ... 310950 : - |
| To GenomeBrowser | scaffold188.1:305793..310950 |
| Genes list of scaffold | scaffold188.1 |
| Synonym | pfu_aug1.0_40055.1_70346 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_188.1_27011.t1 | 3 | 1 | PDZ | 13 | 69 | 1.4013e-45 | 154.2 | 7.1e-12 | 2.6e-08 | 33.9 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 1 | PDZ_2 | 14 | 77 | 2.7e-17 | 62.4 | 7.4e-06 | 0.028 | 14.3 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 1 | Tricorn_PDZ | 31 | 71 | 4.4e-06 | 26.4 | 0.049 | 180.0 | 1.9 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 2 | PDZ | 112 | 195 | 1.4013e-45 | 154.2 | 2.0e-17 | 7.4e-14 | 51.6 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 2 | PDZ_2 | 136 | 194 | 2.7e-17 | 62.4 | 1.4e-06 | 0.0051 | 16.6 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 2 | Tricorn_PDZ | 155 | 199 | 4.4e-06 | 26.4 | 7.7e-05 | 0.28 | 10.9 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 3 | PDZ | 229 | 310 | 1.4013e-45 | 154.2 | 1.1e-22 | 4.1e-19 | 68.5 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 3 | PDZ_2 | 247 | 310 | 2.7e-17 | 62.4 | 5.9e-11 | 2.2e-07 | 30.6 |
| pfu_aug2.0_188.1_27011.t1 | 3 | 3 | Tricorn_PDZ | 273 | 311 | 4.4e-06 | 26.4 | 0.00017 | 0.64 | 9.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_188.1_27011.t1 | gi|676447550|ref|XP_009051444.1| | hypothetical protein LOTGIDRAFT_103997 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_188.1_27011.t1 | gi|291237583|ref|XP_002738713.1| | PREDICTED: ligand of Numb protein X 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_188.1_27011.t1 | gi|260786588|ref|XP_002588339.1| | hypothetical protein BRAFLDRAFT_281382 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_188.1_27011.t1 | gi|573883811|ref|XP_006630059.1| | PREDICTED: E3 ubiquitin-protein ligase LNX-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_188.1_27011.t1 | gi|556998065|ref|XP_006002333.1| | PREDICTED: E3 ubiquitin-protein ligase LNX isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_188.1_27011.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27011.t1 atgattactaaatgttgtcaagttttgagaattggtcctggtgtatttattctcaatttggtccctgaaagtttagcagc gattgacggcagattacgtccagatgacagggttctggagatcaatggtatagacgtgtcttatggcagtcaagatcaag ctgctcatattatacagactagtattgacagagtgcaatttgtgatatcacggcggagtcgtccacagactcctgacctt atacgatccaccactgataatggagtacccccatccagccaccaaactaagtcagaagtcttctcatcctgtcagaaatg taacgatagactagtcacagtaaccaaggagcctaatgagacgttgggtattagtgtagcagggggattgagtagcccca ggggagacacacctatttatatcactaatattaatccgaatggctgcctgggcagaactaaacaaataaagaaaggtgat atcctgctttccataaatgggaacagtttaattggtttgactcacaacgaagctgtaagtcaggtcaaggccaatacaga caacaaggtcgtttgtctcaaggtcattgaaggacctgaaacctcacatggtcagggaaattttactccaacatggttgt tctggcagcaaatgccaagggtttgtcacacagtaaagatggtaacgttactacgaagtcctaacggaagtttaggattt tcactggtgggtggtaacgacagtgatttaggtcccacagtccctgtatatgtaaagtctgtagtcaaggatactccagc tgctaaagacggcaggctcaagtgtggtgatattttgttaagtgttaacggacatagcttacagaatgtaagtcattcca aggcagtagacttgctcaaacaggctgatggtgctgtgacgctggccgtcgtctcctggccgggtactattctttga |
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Protein
| Protein ID | pfu_aug2.0_188.1_27011.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27011.t1 MITKCCQVLRIGPGVFILNLVPESLAAIDGRLRPDDRVLEINGIDVSYGSQDQAAHIIQTSIDRVQFVISRRSRPQTPDL IRSTTDNGVPPSSHQTKSEVFSSCQKCNDRLVTVTKEPNETLGISVAGGLSSPRGDTPIYITNINPNGCLGRTKQIKKGD ILLSINGNSLIGLTHNEAVSQVKANTDNKVVCLKVIEGPETSHGQGNFTPTWLFWQQMPRVCHTVKMVTLLRSPNGSLGF SLVGGNDSDLGPTVPVYVKSVVKDTPAAKDGRLKCGDILLSVNGHSLQNVSHSKAVDLLKQADGAVTLAVVSWPGTIL |
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