Gene
| Gene Model ID | pfu_aug2.0_188.1_27012 |
|---|---|
| Locus | scaffold188.1 : 317792 ... 349300 : - |
| To GenomeBrowser | scaffold188.1:317792..349300 |
| Genes list of scaffold | scaffold188.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_188.1_27012.t1 | 3 | 1 | zf-RING_2 | 27 | 42 | 1.3e-09 | 37.7 | 0.52 | 480.0 | 0.6 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 1 | zf-C3HC4 | 31 | 40 | 4.7e-08 | 32.5 | 0.65 | 600.0 | 0.2 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 1 | zf-RING_5 | 33 | 41 | 5.9e-08 | 32.3 | 0.2 | 180.0 | 1.9 |
| pfu_aug2.0_188.1_27012.t1 | 3 | 1 | zf-C3HC4_2 | 35 | 40 | 8.6e-10 | 38.4 | 0.94 | 870.0 | 0.0 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 1 | zf-C3HC4_3 | 35 | 41 | 1.3e-08 | 34.3 | 0.3 | 270.0 | 1.3 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 1 | zf-C3HC4_4 | 35 | 40 | 2.7e-06 | 27.1 | 1.3 | 1200.0 | -0.6 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 2 | zf-C3HC4_3 | 61 | 106 | 1.3e-08 | 34.3 | 1.5e-11 | 1.4e-08 | 34.2 |
| pfu_aug2.0_188.1_27012.t1 | 3 | 2 | zf-RING_2 | 63 | 100 | 1.3e-09 | 37.7 | 1.4e-12 | 1.3e-09 | 37.7 |
| pfu_aug2.0_188.1_27012.t1 | 3 | 2 | zf-C3HC4_2 | 64 | 100 | 8.6e-10 | 38.4 | 9.2e-13 | 8.6e-10 | 38.4 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 2 | zf-C3HC4 | 64 | 99 | 4.7e-08 | 32.5 | 5.1e-11 | 4.7e-08 | 32.5 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 2 | zf-RING_5 | 64 | 102 | 5.9e-08 | 32.3 | 1.7e-10 | 1.5e-07 | 30.9 |
| pfu_aug2.0_188.1_27012.t1 | 2 | 2 | zf-C3HC4_4 | 64 | 95 | 2.7e-06 | 27.1 | 2.9e-09 | 2.7e-06 | 27.1 |
| pfu_aug2.0_188.1_27012.t1 | 3 | 3 | zf-C3HC4_2 | 134 | 134 | 8.6e-10 | 38.4 | 6.6 | 6100.0 | -2.7 |
| pfu_aug2.0_188.1_27012.t1 | 3 | 3 | zf-RING_2 | 138 | 151 | 1.3e-09 | 37.7 | 2.4 | 2200.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_188.1_27012.t1 | gi|736261939|ref|XP_010790008.1| | PREDICTED: ligand of Numb protein X 2-like [Notothenia coriiceps] | 5.0e-39 |
| pfu_aug2.0_188.1_27012.t1 | gi|390337627|ref|XP_001186180.2| | 1.0e-38 | |
| pfu_aug2.0_188.1_27012.t1 | gi|585197277|ref|XP_006749693.1| | PREDICTED: ligand of Numb protein X 2-like, partial [Leptonychotes weddellii] | 9.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_188.1_27012.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27012.t1 atggcatgtcatgttagagagaacagtgccgcatcatttcatgactatgccaatgaaacggagctctcgttgagtctctc acgcttccgacaaaaggagaatgtggtctgtcaaaagtgtggacagttccatgagccatatggcacccatctatatgatt atcatcaggctatagatgacgacctcacctgtctgatctgccttcagcctctggtgaatcctgttgatactcgatgtggt catacattttgttctcggtgcttaaagaactacctcaagatgaagcaaatgtgtccagtagacaggtcccctcttactct ggcagaccttcaacagtccagtattcttgtcagaagattactggataaactactggtcgtatgtcctaatgtagactact gtgaggaggtattacccaggtgtgatttggaagctcatcttcttcacagggatggtatgacaattctgatacatgtgata catattctgtctattacacattacattgaagtgaatatgaaaaattatcatgaatcaaatttacaagttgagatgccggg gagctatcaccaagtgtatcaagtctag |
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Protein
| Protein ID | pfu_aug2.0_188.1_27012.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27012.t1 MACHVRENSAASFHDYANETELSLSLSRFRQKENVVCQKCGQFHEPYGTHLYDYHQAIDDDLTCLICLQPLVNPVDTRCG HTFCSRCLKNYLKMKQMCPVDRSPLTLADLQQSSILVRRLLDKLLVVCPNVDYCEEVLPRCDLEAHLLHRDGMTILIHVI HILSITHYIEVNMKNYHESNLQVEMPGSYHQVYQV |
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