Gene
| Gene Model ID | pfu_aug2.0_188.1_27014 |
|---|---|
| Locus | scaffold188.1 : 373115 ... 385810 : + |
| To GenomeBrowser | scaffold188.1:373115..385810 |
| Genes list of scaffold | scaffold188.1 |
| Synonym | pfu_aug1.0_9818.1_53428 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_188.1_27014.t1 | 1 | 1 | Ribosomal_S13_N | 1 | 60 | 1.5e-30 | 104.7 | 6.0e-34 | 3.0e-30 | 103.8 |
| pfu_aug2.0_188.1_27014.t1 | 2 | 1 | Ribosomal_S15 | 33 | 42 | 6.0e-24 | 83.6 | 0.94 | 4600.0 | -2.6 |
| pfu_aug2.0_188.1_27014.t1 | 2 | 2 | Ribosomal_S15 | 66 | 141 | 6.0e-24 | 83.6 | 1.4e-27 | 7.1e-24 | 83.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_188.1_27014.t1 | gi|410907545|ref|XP_003967252.1| | PREDICTED: 40S ribosomal protein S13 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_188.1_27014.t1 | gi|50344812|ref|NP_001002079.1| | 40S ribosomal protein S13 [Danio rerio] | 0.0 |
| pfu_aug2.0_188.1_27014.t1 | gi|318054256|ref|NP_001187245.1| | 40S ribosomal protein S13 [Ictalurus punctatus] | 0.0 |
| pfu_aug2.0_188.1_27014.t1 | gi|736306194|ref|XP_010794693.1| | PREDICTED: 40S ribosomal protein S13 [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_188.1_27014.t1 | gi|556959931|ref|XP_005990576.1| | PREDICTED: 40S ribosomal protein S13 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_188.1_27014.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27014.t1 atgggtcgaatgcacaatccaggaaagggtatatcccagtcagccctaccatacaggagatctgtacccacatggctaaa gttaacatctgaagatgtacaggagcagataatgaaattggccaagaaaggccttacaccatctcagattggtgtaattc tgagagattctcatggtgtagcccaggtgagattcgtaacaggaaacaaaatattgaggatccttaagggtaaaggcatg gcccctgatttaccagaggatctataccacctgatcaagaaagccgtcaatatcagaaaacacttggagaggaacagaaa agataaagactctaaattcagattgattttagtggagagcagaattcatcgtctggccagatactacaagacgaaaagaa ttttggccccaaactggaagtactaa |
|
Protein
| Protein ID | pfu_aug2.0_188.1_27014.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_188.1_27014.t1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEDVQEQIMKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKGKGM APDLPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKRILAPNWKY |
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