Gene
| Gene Model ID | pfu_aug2.0_1883.1_11922 |
|---|---|
| Locus | scaffold1883.1 : 122666 ... 126753 : + |
| To GenomeBrowser | scaffold1883.1:122666..126753 |
| Genes list of scaffold | scaffold1883.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytochrome b-245 light chain-like | GO:0005488 GO:0005737 GO:0043020 GO:0044699 GO:0072593 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1883.1_11922.t1 | 1 | 1 | Cytochrom_B558a | 4 | 95 | 4.0e-39 | 134.1 | 1.49939e-42 | 4.4e-39 | 134.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1883.1_11922.t1 | gi|260819216|ref|XP_002604933.1| | hypothetical protein BRAFLDRAFT_58490 [Branchiostoma floridae] | 4.0e-31 |
| pfu_aug2.0_1883.1_11922.t1 | gi|466059720|ref|XP_004280114.1| | PREDICTED: cytochrome b-245 light chain [Orcinus orca] | 1.0e-30 |
| pfu_aug2.0_1883.1_11922.t1 | gi|602716600|ref|XP_007468496.1| | PREDICTED: cytochrome b-245 light chain-like [Lipotes vexillifer] | 2.0e-30 |
| pfu_aug2.0_1883.1_11922.t1 | gi|525506987|ref|NP_001267539.1| | cytochrome b-245 light chain [Tursiops truncatus] | 5.0e-30 |
| pfu_aug2.0_1883.1_11922.t1 | gi|74096347|ref|NP_001027717.1| | p22phox protein [Takifugu rubripes] | 1.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_1883.1_11922.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1883.1_11922.t1 atggcgatgatagaatgggcaatgtgggccaatgaacaggccgttctcagtgcctttgtgataatatttggtggtatatt aggagtgactggaatgttctctggctgggagattggaatttatgcactaattgctggacttcttattctattaatagaat atcccagaggaaaaagagcaaaaggaaggacagatgagagaaagggacagcaggttttgacgaaggctatgtctcatctt ggcttcttcactcacaactactttgttcgcttcttaatccacctagt |
|
Protein
| Protein ID | pfu_aug2.0_1883.1_11922.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1883.1_11922.t1 MAMIEWAMWANEQAVLSAFVIIFGGILGVTGMFSGWEIGIYALIAGLLILLIEYPRGKRAKGRTDERKGQQVLTKAMSHL GFFTHNYFVRFLIHL |
|