Gene
| Gene Model ID | pfu_aug2.0_1885.1_18585 |
|---|---|
| Locus | scaffold1885.1 : 3436 ... 9225 : + |
| To GenomeBrowser | scaffold1885.1:3436..9225 |
| Genes list of scaffold | scaffold1885.1 |
| Synonym | pfu_aug1.0_1795.1_22762 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1885.1_18585.t1 | 2 | 1 | Fibrinogen_C | 19 | 45 | 4.9e-15 | 55.7 | 0.82 | 1700.0 | -1.7 |
| pfu_aug2.0_1885.1_18585.t1 | 2 | 2 | Fibrinogen_C | 72 | 127 | 4.9e-15 | 55.7 | 5.8e-18 | 1.2e-14 | 54.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1885.1_18585.t1 | gi|734648839|ref|XP_010753668.1| | PREDICTED: microfibril-associated glycoprotein 4-like, partial [Larimichthys crocea] | 6.0e-13 |
| pfu_aug2.0_1885.1_18585.t1 | gi|734644169|ref|XP_010751110.1| | PREDICTED: microfibril-associated glycoprotein 4-like [Larimichthys crocea] | 7.0e-13 |
| pfu_aug2.0_1885.1_18585.t1 | gi|260789219|ref|XP_002589645.1| | hypothetical protein BRAFLDRAFT_99252 [Branchiostoma floridae] | 1.0e-12 |
| pfu_aug2.0_1885.1_18585.t1 | gi|586563572|ref|XP_006915032.1| | PREDICTED: angiopoietin-2 isoform X3 [Pteropus alecto] | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_1885.1_18585.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1885.1_18585.t1 atgaataattcagacgatacggaccagctgacgaacttagtaaaggttgttactgagataagaaaagatataactgatat atcgatgaaacaggacaaattcgccggagatgtacaagactatctggatacaatgaacagtcagattaatatgctgaata caacactatcatcagttatgccaaatgagtccaaaattcaaacaagaaagccaggcgattgtaaagagatacttaatttt gaacccaactccagttccggcgtgtatactatttttcccgaaggatctgttgggtattcggtatactgtgatatgacaac acaaggtgggggatggacggtaattcaaaggagaattaacggtgttttgaatttgataaaacctggcaagaatacaaaga tggatttggagatctgtgtggcgagcactggatag |
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Protein
| Protein ID | pfu_aug2.0_1885.1_18585.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1885.1_18585.t1 MNNSDDTDQLTNLVKVVTEIRKDITDISMKQDKFAGDVQDYLDTMNSQINMLNTTLSSVMPNESKIQTRKPGDCKEILNF EPNSSSGVYTIFPEGSVGYSVYCDMTTQGGGWTVIQRRINGVLNLIKPGKNTKMDLEICVASTG |
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