Gene
| Gene Model ID | pfu_aug2.0_189.1_30371 |
|---|---|
| Locus | scaffold189.1 : 42536 ... 51200 : + |
| To GenomeBrowser | scaffold189.1:42536..51200 |
| Genes list of scaffold | scaffold189.1 |
| Synonym | pfu_aug1.0_13007.1_17941 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_189.1_30371.t1 | 1 | 1 | Ribosomal_S4 | 8 | 106 | 3.5e-29 | 101.0 | 9.1e-33 | 6.8e-29 | 100.1 |
| pfu_aug2.0_189.1_30371.t1 | 1 | 1 | S4 | 107 | 150 | 2.4e-13 | 49.3 | 1.0e-16 | 7.5e-13 | 47.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_189.1_30371.t1 | gi|340724942|ref|XP_003400837.1| | 0.0 | |
| pfu_aug2.0_189.1_30371.t1 | gi|675874354|ref|XP_009022737.1| | hypothetical protein HELRODRAFT_155894 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_189.1_30371.t1 | gi|410928550|ref|XP_003977663.1| | PREDICTED: 40S ribosomal protein S9 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_189.1_30371.t1 | gi|746869924|ref|XP_011066131.1| | PREDICTED: 40S ribosomal protein S9 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_189.1_30371.t1 | gi|156361995|ref|XP_001625568.1| | predicted protein [Nematostella vectensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_189.1_30371.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_189.1_30371.t1 atgcctcgtgtgccactagtacgtagtaaaacctacacaaccccaagacgtccttttgaaaaggaacgtttggatcagga gttgaagctgattggtgaatttggtctcagaaataaacgtgaagtatggagagttaaatacactctaggaaaaattagga aggctgcaagagaattgctgactctagaagaaaaagatccaaaacgtctgtttgaaggcaatgccctcttgcgtagactt gtgcgcattggagtacttgatgaaagcaaaatgaagctcgattatgtattgggtttgagaacagaggatttcttggaacg tcgtctccagactcaagtattcaaattgggattggccaaaagtattcaccatgccagagtgttgatcagacaaagacaca ttcgtgtgaggaaacaggtagtgaacatcccatcttttgtggttcgtttggattcacaaaaacacattgacttctctctg aggtcaccattcggaggtggacgtccaggccgtgttaagaggaagaacgccaagaagggatcaggtggtggagatgaaga ggaagattaa |
|
Protein
| Protein ID | pfu_aug2.0_189.1_30371.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_189.1_30371.t1 MPRVPLVRSKTYTTPRRPFEKERLDQELKLIGEFGLRNKREVWRVKYTLGKIRKAARELLTLEEKDPKRLFEGNALLRRL VRIGVLDESKMKLDYVLGLRTEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSL RSPFGGGRPGRVKRKNAKKGSGGGDEEED |
|