Gene
| Gene Model ID | pfu_aug2.0_189.1_30382 |
|---|---|
| Locus | scaffold189.1 : 210241 ... 237347 : + |
| To GenomeBrowser | scaffold189.1:210241..237347 |
| Genes list of scaffold | scaffold189.1 |
| Synonym | pfu_aug1.0_16257.1_32670 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_189.1_30382.t1 | 1 | 1 | HCaRG | 34 | 210 | 2.2e-26 | 92.4 | 1.7e-30 | 2.5e-26 | 92.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_189.1_30382.t1 | gi|260786564|ref|XP_002588327.1| | hypothetical protein BRAFLDRAFT_122892 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_189.1_30382.t1 | gi|260781355|ref|XP_002585781.1| | hypothetical protein BRAFLDRAFT_132957 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_189.1_30382.t1 | gi|676459998|ref|XP_009055480.1| | hypothetical protein LOTGIDRAFT_228614 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_189.1_30382.t1 | gi|156383483|ref|XP_001632863.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_189.1_30382.t1 | gi|557003860|ref|XP_006003948.1| | PREDICTED: COMM domain-containing protein 5-like isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_189.1_30382.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_189.1_30382.t1 atgtcgattattcaagtaacaggatcaggggggagtgtcccttcagatagaactcctttttatggtgggagaattcccca ggaaatcaaatccctgataaaacctctaggaaaatgtgataaacagacattccgtaaactacttcaatggatagttgcag caatggaagggaaggatgtggagtatgagaactttaaggacctggcggtgggtgatgtaactgaggagatcctaactgtt atatatactgggttacactcactcttacgtagtgccttacgacttccattaacttcccttaaacctgagatgtttaatga agacattaaagaattacaaattccagagcagtttcaagaagatcttgccagtgtggtctttggttcacgtcgtccacata tagaaaaccataccctggaaagccggccgagacttccaaggatagaatccttaaaatggagagttgatgtcggcatatca acaagtgtccttaacagagtattagagcccgcaatcatgatggaaataactctaagtgatggacgagtccagaattttga ggtgccggtgtcgaagtttcatgaacttcgttacaacgtcgcctacgtccttaaggaaatggaagatttagagaagagga acatccttaaaatccaggactaa |
|
Protein
| Protein ID | pfu_aug2.0_189.1_30382.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_189.1_30382.t1 MSIIQVTGSGGSVPSDRTPFYGGRIPQEIKSLIKPLGKCDKQTFRKLLQWIVAAMEGKDVEYENFKDLAVGDVTEEILTV IYTGLHSLLRSALRLPLTSLKPEMFNEDIKELQIPEQFQEDLASVVFGSRRPHIENHTLESRPRLPRIESLKWRVDVGIS TSVLNRVLEPAIMMEITLSDGRVQNFEVPVSKFHELRYNVAYVLKEMEDLEKRNILKIQD |
|