Gene
| Gene Model ID | pfu_aug2.0_1891.1_05302 |
|---|---|
| Locus | scaffold1891.1 : 63734 ... 91925 : - |
| To GenomeBrowser | scaffold1891.1:63734..91925 |
| Genes list of scaffold | scaffold1891.1 |
| Synonym | pfu_aug1.0_27.1_36238 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| proteasome subunit alpha type-4 | GO:0004298 GO:0005634 GO:0005737 GO:0006511 GO:0019773 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1891.1_05302.t1 | 1 | 1 | Proteasome_A_N | 387 | 409 | 3.1e-14 | 51.9 | 7.2e-18 | 5.4e-14 | 51.2 |
| pfu_aug2.0_1891.1_05302.t1 | 1 | 1 | Proteasome | 412 | 597 | 0.0 | 189.7 | 0.0 | 0.0 | 189.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1891.1_05302.t1 | gi|736186775|ref|XP_010770288.1| | PREDICTED: proteasome subunit alpha type-4 [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_1891.1_05302.t1 | gi|638256052|ref|NP_001279283.1| | proteasome subunit alpha type-4 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1891.1_05302.t1 | gi|573881894|ref|XP_006629137.1| | PREDICTED: proteasome subunit alpha type-4-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1891.1_05302.t1 | gi|348526654|ref|XP_003450834.1| | PREDICTED: proteasome subunit alpha type-4-like isoform X1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_1891.1_05302.t1 | gi|657583069|ref|XP_008295624.1| | PREDICTED: proteasome subunit alpha type-4-like [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1891.1_05302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1891.1_05302.t1 atgttaaacgtcttcaaattcaataacattattgaagacttgataaatttacagcatggaccagacatgactactgtcaa gaagacccagccagtggaggacatggttcgtactgcgccctcgtcacccgccacgcttgatgagagttcagcatgtgaat taacgaaaccgcacacgactacttccaagaagacccagccagtggggacagggttcgggcttcgccctcgtcacccgcca cgcctgagtagagttcagcatgtgaatgaacggcccctgcgttctgcgttcttgtttgtttgtggtcatctaactgtgga gaggttgttttacacaattaggaacacacccacaggttgtaacatacatcagagatctccagtaggaccactctgtactt accacagaggaacacacgcacaggttgtaatacacatcagacaaagatctccatcaagactacccagtactgaccacagc agaacacaccaagaggacgtaacacacatcagacagatatctccatcaagactaccctgtattcaccacagaggaacact tccacaggatgtaaaacacaggcagagatcgcaattaagactaccctgtactgaccacagcggaacacacccagatgatg taacacacatcagacagagatctccagcaagactacccttcactggccacagcagaacacacccacaggttgttatacat atcagacagagatctccatcaagactaacatgtactgaccacagcggaggaacacacccaaaggttgtaacacacatcag acagagatctccagtaggaccactctgtactaaccacagaggaacacaccaacaggatgtaacacacatcatgcagagat ctccatcaatactaccctgtactgaccacagcggaacacacacacaggatgtaacacacatcatgcagagatctccagta ggaccactctgtactaaccacagaggaacacacccacattatgtaacacacatcatgcagagatctccatcaatactacc ctgtacagaggagcacatccaaagcatatataactccttctcttgggaaaggcgacactcgtcctctccgtttaatttcc tcaatttagaggtttaccggcttgcaatgtctcgaagatatgactcccgtacaacaatcttctccccagaggggagatta tatcaggttgaatatgccatggaagccataggccatgccggcacatgtcttggcattcttgcaaatgatggtgttctctt ggcagcagaaagacggaatacaaacaaattgttggatgaagtgtcatattctgagaagatctacaagctatatgatgaca tggtgtgcagtgtagctggcattacatcagatgctaacgtcctcacaaatgaactacgtcttattgcacagaggtattat ttacaatatcaagaacccattccatgtgagcagcttgtcagtacgttatgtgatctcaaacaggcatacacacagttcgg aggaaagagaccatttggagtttctatattatacatgggttgggataaacattatggctttcagttataccagagtgatc ctagtggtaattatggtggatggaaagctacatgtataggaaataacagtgctaatgcagtatcaatgttgaagcaagat tacaaagagggagaagtgaaactttcagatgctttacaacttgcaatcaaagttctcagtaaaacactggatatgacaaa gctcacaccagaaaaagttgagattgccaccctgaccagagaggagggaaagacaaagatgaccatactgcagtcagagg aggtggagaaactcatcaagaaacatgaggaagaagaagctaagacagaaaaagccaagtcatcataa |
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Protein
| Protein ID | pfu_aug2.0_1891.1_05302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1891.1_05302.t1 MLNVFKFNNIIEDLINLQHGPDMTTVKKTQPVEDMVRTAPSSPATLDESSACELTKPHTTTSKKTQPVGTGFGLRPRHPP RLSRVQHVNERPLRSAFLFVCGHLTVERLFYTIRNTPTGCNIHQRSPVGPLCTYHRGTHAQVVIHIRQRSPSRLPSTDHS RTHQEDVTHIRQISPSRLPCIHHRGTLPQDVKHRQRSQLRLPCTDHSGTHPDDVTHIRQRSPARLPFTGHSRTHPQVVIH IRQRSPSRLTCTDHSGGTHPKVVTHIRQRSPVGPLCTNHRGTHQQDVTHIMQRSPSILPCTDHSGTHTQDVTHIMQRSPV GPLCTNHRGTHPHYVTHIMQRSPSILPCTEEHIQSIYNSFSWERRHSSSPFNFLNLEVYRLAMSRRYDSRTTIFSPEGRL YQVEYAMEAIGHAGTCLGILANDGVLLAAERRNTNKLLDEVSYSEKIYKLYDDMVCSVAGITSDANVLTNELRLIAQRYY LQYQEPIPCEQLVSTLCDLKQAYTQFGGKRPFGVSILYMGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSANAVSMLKQD YKEGEVKLSDALQLAIKVLSKTLDMTKLTPEKVEIATLTREEGKTKMTILQSEEVEKLIKKHEEEEAKTEKAKSS |
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