Gene
| Gene Model ID | pfu_aug2.0_19.1_29979 |
|---|---|
| Locus | scaffold19.1 : 61585 ... 66845 : - |
| To GenomeBrowser | scaffold19.1:61585..66845 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_18471.1_54490 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_29979.t1 | 1 | 1 | Lectin_C | 27 | 135 | 3.4e-15 | 56.5 | 1.0e-18 | 5.1e-15 | 56.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_29979.t1 | gi|597778159|ref|XP_007252721.1| | PREDICTED: neurocan core protein [Astyanax mexicanus] | 1.0e-11 |
| pfu_aug2.0_19.1_29979.t1 | gi|585706855|ref|XP_006823881.1| | PREDICTED: macrophage mannose receptor 1-like [Saccoglossus kowalevskii] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_29979.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29979.t1 atggagtgcactatagctgtcccagcagtaaatatacctggctataccantaacctttgtgtccaagtacactacaacaa agtgaactgggacaaggcacgggcttattgtagggagtccggaggagatctcctggaaataaaaacccggaccatgcagg acttcgtggtgtcacaccttaagcacaccggtagatccgctttgggctactggtttggggctacagatagaaagcaggag aataagtggcagtggattaatgacaatgttgccatgcattacagtaactgggctgctgaccaaggcccacgacatccagg attcttatttggagggctagaagactgtgctctgatgaagccaaagacaggatactcatggcatgatgctctttgtaatt caccaataggagaaacttacgccttcctttgtcaatttgataagcttctcaatcagggatacatttgtgaccgactgagg aagttctacggtcgatacggggaactcgtcataaactacgatctcccattatccagaatggtggatgatattcttagaca atttgaaccatccaaccatagaaatggaaataatcagatgacaattctaccaaactga |
|
Protein
| Protein ID | pfu_aug2.0_19.1_29979.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29979.t1 MECTIAVPAVNIPGYTXNLCVQVHYNKVNWDKARAYCRESGGDLLEIKTRTMQDFVVSHLKHTGRSALGYWFGATDRKQE NKWQWINDNVAMHYSNWAADQGPRHPGFLFGGLEDCALMKPKTGYSWHDALCNSPIGETYAFLCQFDKLLNQGYICDRLR KFYGRYGELVINYDLPLSRMVDDILRQFEPSNHRNGNNQMTILPN |
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