Gene
| Gene Model ID | pfu_aug2.0_19.1_29995 |
|---|---|
| Locus | scaffold19.1 : 380859 ... 382790 : - |
| To GenomeBrowser | scaffold19.1:380859..382790 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_289.1_14949 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_29995.t1 | 1 | 1 | Prominin | 1 | 98 | 3.8e-16 | 57.8 | 2.8e-20 | 4.1e-16 | 57.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_29995.t1 | gi|697441099|ref|XP_009663912.1| | PREDICTED: LOW QUALITY PROTEIN: prominin-1-A-like [Struthio camelus australis] | 2.0e-09 |
| pfu_aug2.0_19.1_29995.t1 | gi|641778852|ref|XP_008172359.1| | PREDICTED: prominin-1 isoform X14 [Chrysemys picta bellii] | 6.0e-08 |
| pfu_aug2.0_19.1_29995.t1 | gi|530609127|ref|XP_005296210.1| | PREDICTED: prominin-1 isoform X12 [Chrysemys picta bellii] | 7.0e-08 |
| pfu_aug2.0_19.1_29995.t1 | gi|641778833|ref|XP_008172353.1| | PREDICTED: prominin-1 isoform X3 [Chrysemys picta bellii] | 7.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_29995.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29995.t1 atgttcctgctgggagccttgctgatgctgttgacgaccatctcgtttatgattggtgggaattttgagaagatttgtca aaccatgtttgatcttacacttttcaaagatttcatagacactggaggtatccctggattcgcgcttggtaccatgttgt tgaacgatccttccatcaacatcagtctctacaacgttctactaggatgtagagcgaacaaggctccatttgagcttctg taccttaattctttggtacccatagacgactacctgaattatagccagctcacctga |
|
Protein
| Protein ID | pfu_aug2.0_19.1_29995.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29995.t1 MFLLGALLMLLTTISFMIGGNFEKICQTMFDLTLFKDFIDTGGIPGFALGTMLLNDPSINISLYNVLLGCRANKAPFELL YLNSLVPIDDYLNYSQLT |
|