Gene
| Gene Model ID | pfu_aug2.0_19.1_29996 |
|---|---|
| Locus | scaffold19.1 : 382863 ... 388960 : - |
| To GenomeBrowser | scaffold19.1:382863..388960 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_289.1_14949 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_29996.t1 | 2 | 1 | Prominin | 32 | 144 | 0.0 | 182.1 | 8.0e-35 | 5.7e-32 | 110.1 |
| pfu_aug2.0_19.1_29996.t1 | 2 | 2 | Prominin | 143 | 366 | 0.0 | 182.1 | 1.4e-25 | 1.0e-22 | 79.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_29996.t1 | gi|632943881|ref|XP_007887198.1| | PREDICTED: prominin-1 isoform X2 [Callorhinchus milii] | 1.0e-34 |
| pfu_aug2.0_19.1_29996.t1 | gi|632943879|ref|XP_007887197.1| | PREDICTED: prominin-1 isoform X1 [Callorhinchus milii] | 1.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_29996.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29996.t1 atgataatattttgtgtttgtctcctgtttctcgtcccctgggtcggggagggggacggggccacgatatcggacgccta cgggaatacggcgtatgacaatggtaccgtggtatggggtagcgttcccgcgggacaggcgtatcagacagtgaatactt acgatgaaggggggctggggacactatttgcttttgcgaggagttttgtgaatacagtacaaccaaatcctttcccattt gatttgatcaaacaagttctgaatggagaatttgacatttctgcccaatacatggagcttatcaacttcgccatgggttt tggtatctgctttgtgattggtctgttatatgtgatattcttgcctctgtgtggatgctgcttttgctgctgccggtgtt gtggtaactgtggaggtgacatgaaacagcaattcaagttcgttgccattgatatgttcacaatagtagcacaagctcta attcgagatatttctggaatcggtgccgtgttgactccagctatattctcagttttgaatattgacccagtcatcaacgc cgtcatagccttggatacgaacgtcaaccaaatcgacgctgctttggaccaagtgatatcggacctgaatgcattacaga acgcgacagacggactgacaacggatttgaacactctgaagacggacatagatacaacaaagaccggatgtagcagcgac tgtacaccgaccacggcctgtgacagttttgatacgtcacagttggctgtctcggccgatttcagctccttgcctgatct aagttcaacacaatcagcaatcaagagcgttgtcgcacagaacttgactggaattgcactagcggcaaaaagcgctctag acgatatggagaacacaatcaattcatcgacatcgtccatccaatcatctctacagagctccttcgacagtttccagtcc acactaaatacgatgaccaatgatttagaagctcaagtccaaggggcaatagatacaacaaacttgaagatggaacttgg cagcttttttagaacatcgcttgattatgacgtatacagacagtattttggttacggtctgattggtctgtttccctcct acccatcctgtactcctgattatcacacagtattttgggtacggtctgatgggtctgttttccctcctacccatcttgct gctactgggcatatgttgcggttgctgctgcctggggaaggacactaa |
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Protein
| Protein ID | pfu_aug2.0_19.1_29996.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29996.t1 MIIFCVCLLFLVPWVGEGDGATISDAYGNTAYDNGTVVWGSVPAGQAYQTVNTYDEGGLGTLFAFARSFVNTVQPNPFPF DLIKQVLNGEFDISAQYMELINFAMGFGICFVIGLLYVIFLPLCGCCFCCCRCCGNCGGDMKQQFKFVAIDMFTIVAQAL IRDISGIGAVLTPAIFSVLNIDPVINAVIALDTNVNQIDAALDQVISDLNALQNATDGLTTDLNTLKTDIDTTKTGCSSD CTPTTACDSFDTSQLAVSADFSSLPDLSSTQSAIKSVVAQNLTGIALAAKSALDDMENTINSSTSSIQSSLQSSFDSFQS TLNTMTNDLEAQVQGAIDTTNLKMELGSFFRTSLDYDVYRQYFGYGLIGLFPSYPSCTPDYHTVFWVRSDGSVFPPTHLA ATGHMLRLLLPGEGH |
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