Gene
| Gene Model ID | pfu_aug2.0_19.1_29998 |
|---|---|
| Locus | scaffold19.1 : 409462 ... 453720 : - |
| To GenomeBrowser | scaffold19.1:409462..453720 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_289.1_14951 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_29998.t1 | 28 | 1 | Collagen | 37 | 94 | 0.0 | 642.9 | 2.5e-12 | 1.2e-08 | 34.3 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 2 | Collagen | 79 | 134 | 0.0 | 642.9 | 2.5e-12 | 1.3e-08 | 34.2 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 3 | Collagen | 141 | 194 | 0.0 | 642.9 | 2.2e-12 | 1.1e-08 | 34.5 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 4 | Collagen | 200 | 215 | 0.0 | 642.9 | 0.00045 | 2.2 | 7.8 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 5 | Collagen | 231 | 289 | 0.0 | 642.9 | 6.6e-13 | 3.3e-09 | 36.1 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 6 | Collagen | 282 | 339 | 0.0 | 642.9 | 2.8e-12 | 1.4e-08 | 34.1 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 7 | Collagen | 341 | 393 | 0.0 | 642.9 | 1.3e-11 | 6.4e-08 | 32.0 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 8 | Collagen | 396 | 446 | 0.0 | 642.9 | 3.1e-09 | 1.5e-05 | 24.4 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 9 | Collagen | 430 | 481 | 0.0 | 642.9 | 2.8e-11 | 1.4e-07 | 30.9 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 10 | Collagen | 496 | 553 | 0.0 | 642.9 | 3.0e-13 | 1.5e-09 | 37.2 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 11 | Collagen | 532 | 592 | 0.0 | 642.9 | 3.0e-11 | 1.5e-07 | 30.8 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 12 | Collagen | 601 | 655 | 0.0 | 642.9 | 1.1e-12 | 5.4e-09 | 35.4 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 13 | Collagen | 643 | 701 | 0.0 | 642.9 | 7.5e-13 | 3.7e-09 | 35.9 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 14 | Collagen | 709 | 763 | 0.0 | 642.9 | 1.8e-11 | 8.8e-08 | 31.5 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 15 | Collagen | 767 | 820 | 0.0 | 642.9 | 6.3e-11 | 3.1e-07 | 29.8 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 16 | Collagen | 796 | 853 | 0.0 | 642.9 | 2.8e-10 | 1.4e-06 | 27.7 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 17 | Collagen | 861 | 918 | 0.0 | 642.9 | 1.7e-08 | 8.5e-05 | 22.0 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 18 | Collagen | 894 | 948 | 0.0 | 642.9 | 1.0e-11 | 5.0e-08 | 32.3 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 19 | Collagen | 953 | 1008 | 0.0 | 642.9 | 2.1e-12 | 1.0e-08 | 34.5 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 20 | Collagen | 983 | 1042 | 0.0 | 642.9 | 7.5e-11 | 3.7e-07 | 29.5 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 21 | Collagen | 1049 | 1106 | 0.0 | 642.9 | 2.5e-10 | 1.2e-06 | 27.9 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 22 | Collagen | 1088 | 1146 | 0.0 | 642.9 | 2.9e-12 | 1.4e-08 | 34.1 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 23 | Collagen | 1139 | 1193 | 0.0 | 642.9 | 1.2e-08 | 6.1e-05 | 22.4 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 24 | Collagen | 1208 | 1262 | 0.0 | 642.9 | 1.9e-11 | 9.2e-08 | 31.5 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 25 | Collagen | 1251 | 1309 | 0.0 | 642.9 | 9.9e-13 | 4.9e-09 | 35.6 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 26 | Collagen | 1299 | 1357 | 0.0 | 642.9 | 4.5e-08 | 0.00022 | 20.6 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 27 | Collagen | 1370 | 1421 | 0.0 | 642.9 | 7.1e-09 | 3.5e-05 | 23.2 |
| pfu_aug2.0_19.1_29998.t1 | 28 | 28 | Collagen | 1394 | 1451 | 0.0 | 642.9 | 2.7e-10 | 1.3e-06 | 27.8 |
| pfu_aug2.0_19.1_29998.t1 | 2 | 1 | C4 | 1455 | 1563 | 0.0 | 276.8 | 2.38221e-44 | 1.2e-40 | 137.9 |
| pfu_aug2.0_19.1_29998.t1 | 2 | 2 | C4 | 1566 | 1676 | 0.0 | 276.8 | 1.12104e-44 | 5.60001e-41 | 139.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_29998.t1 | gi|268573586|ref|XP_002641770.1| | C. briggsae CBR-EMB-9 protein [Caenorhabditis briggsae] | 0.0 |
| pfu_aug2.0_19.1_29998.t1 | gi|308501333|ref|XP_003112851.1| | CRE-EMB-9 protein [Caenorhabditis remanei] | 0.0 |
| pfu_aug2.0_19.1_29998.t1 | gi|339247897|ref|XP_003375582.1| | collagen alpha-2(IV) chain [Trichinella spiralis] | 0.0 |
| pfu_aug2.0_19.1_29998.t1 | gi|268577295|ref|XP_002643629.1| | C. briggsae CBR-LET-2 protein [Caenorhabditis briggsae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_29998.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29998.t1 atgaattctcggatagttattctcctcgtagttctagcagccactctcttggatgtcgcgcttggagccgcttgtaaagg ctgcggcactacagtttgcttatgtgcgggacagaagggaattcgaggtaatagaggcttgcccggtctgagaggacccc cgggcctgccaggatttattggcccagaggggccgcccggtccacggggcatccaaggagaaagcggcgaggatggcgcc agcggtccaaaaggagataggggtgatatggggctgcctggattcacgggcgtgccaggagtaccgggagaaaatggtcg gtcaggtcgccctggacaggagggtctacaaggacccaggggtgaatcgggtgctccaggattaaagggagagcctggag atcgtgtagactctgatgtcggagagaagggagcgccaggagaacctggaagaacaggacaatcgggaccaagaggaata cctggtccaccaggtgatagaggcccttatggtgacgcaggcttaccgggagaaactggaacggtgggaataccaggaga aaagggagaaatgggagagacaaaacctgtggaaaacggaatgcctggtgatcccggcccgcaaggaccccctgggcccc caggagagattctgcaaatacgaacgatcccaccagagcagatcttacagggtgaggtaggagagcctggccctataggc ccagtgggcttctccggtatcccaggagtcacaggtatcaggggtgatgatggcagaaaaggagaacctggagcaaaggg accacctggattctctggggagcaaggaagaagaggcaaaagaggaaaggatggcccacaaggagaatatggccccaagg gcatggcaggtgaaaaaggccttcctggtttcccaggtctcaaaggaagacagggtccatcaggagatattggataccaa ggaccaaggggagagaaaggactcaggggatttaaaggagaagagagaagggagggaactggtctccctggaccacgagg accaccaggagagtttggtcctgatggtcaaccaggatatccaggtagggacggtgctgttggagcagttggcaggaatg gtccccccggcctcccgggtccagatggacttccaggtctgaggggaccagctggttcctctaccccaggggaaagagga gatccaggccaggtaggagaaccttgtggtgtgtgtcccccaggattgcctggtctccctggagattctggagacccagg attggacggtttaccgggcttggatggacagccaggattaccaggcctgtttggtgatgtcggtttcccaggaattccag gtttacctggtcggaatggagagaagggatcgctggggccaactggaccaagggggcgtcagggactgccaggtcctgat ggtgtacttataggaagcctgcctttaaaaatgaaaggtagaccaggagaagtaggccttgtaggtactccaggccgtga cggatcgcccggcttcccaggagagactggcagaactggacttccaggacgagctggcgtgaatggagatgatggaagac ctggtttacaaggtttagacggtttgccgggattacctggagaagacggtgtaccaggaatggtgggtgattccattgat ggggaggtaggacgggtcgggcctaaaggctttgaaggactccccggcttccctggaatgaaaggatttaaaggtccaaa aggtgaacctggaagaccgatagtggaacaaggaaagattggagacatcggagaaatgggtctgccaggattggatggaa tggacgggcttcctggactaccaggaatgaagggagaatcaggtatccctggggagtcagggaggaacggtttccctgga atgaagggtgagccaggattctctggtgtgcctggtgagaggggacaggtcggagctaagggtttccccgggctcccagg tctggatggtttacctggattgccagggaacaagggacagccaggtgaagaaggtctacctggaattccaggtgaaaggg gtttagttggagatccggggcgggagccacttagaccgttacccggcagaccaggggatccaggctttagaggcgttgat ggcttaccaggaatcccaggagaaagaggaagaccaggcttagacggactacctggtgataaaggaatcggaggtgatcc tggagtgagtggacttcctggtttaccaggatttaagggtgagagaggtggaactctccaaggtccacccggagcaaagg gcttcagaggcagacccggagtcccaggagagacgggtttccgaggggctcctggggatgctgggttgcctgggttacca ggaactgacggcgagaccggaacaccaggccttcctggtttccaagggatagatggcgaacaaggtagagagggtgcaag aggcgagcccgggctaccaggacttcctggactgccaggattgtcagggccaaaaggagaccggggagccacagggccta atgggggccctggcattccaggggaacagggccaagttggtgcatttggtgatcgaggtgagccagggttgaacggtttc ccaggacagcgaggcttaccaggacgtaagggcgcatcaggagaaccaggatttccgggaggtcccggcagacggggaga accaggtttcccagggagagacggagaacccggagaaagaggattcccaggtgaggatggtgcacctggacgtcggggat tggacggtccaaatgggagaaagggagacgcaggagaaaggggtgtgtccttacctggacaacaaggtttacctggaaga ccaggccaagatggtttacctggacttgatggtttacctggagaaccaggacctgatggtgaaatgggaagaccaggtga ggatggaatcagaggtgactccggattcccaggtattgacggtgagccaggtcgtcaaggatttccgggtataaagggag aaaggggagtttcaggtctgccaggtgtacccggagagaggggcatggtgggagagcccggtaggcagggcttcgatgga cagccaggagtcaacggggacgtaggaccagacggaattccaggagaaagaggtcgtgttggcggtccaggagacgatgg gttcagaggtcgtgatggtttacctggactaaacggaattaaaggattccctggagataatggagaaccaggtctgcctg gattccctggcatgaaaggaaatcccggacttccaggacttaggggaagaccaggggagcgaggattacctggacttgag ggcctgccaggagtgcccggggagagaggcccagtgggtgatattggattcattggtcgaccagggtcgccaggagaaga tgtttttggccaagcgggagcgagaggagactttggtttacctggcactgatggcttaacaggcctgaagggcttgcccg gctcaccaggtttacctggactcccgggcttgcagggccagaaaggtaaccagggcagaagtataaacgctagaaaagga gagccaggagatgacggattatttggtttcccaggacgtcagggagaaaagggtttccctggccgtcccggtttaccggg tattgacggatctaagggaggaaatggtttacctggattcccaggggaagacggacaagttggtgatgatggactgccag gcttgtttggagagccaggacttgatggcataccaggtgaacgaggaagaataggcgatcctggtcgtgatggtgaacct ggagtccctggattccaaggagacccaggaaggcccggtctgccaggattctttggtctgaaaggtgaaaaaggtcaacc aggagatgttggcatcccaggaccgttcccagatcccaggccaaacattaacgacaagggagaacgaggattcccagggc ctcgtggtctcagaggcatgaaaggccagccaggacctcaaggtcaaccaggagatgttggcatcccaggaccgttccca gatcccaggccaaacattaacgacaagggagaacgaggattcccagggcctcgtggtctcagaggcatgaaaggccagcc aggacctcaaggaggtgacgggccaggcggagctagaggtaacccaggagataatggtcctgtgggaattcccggacgta aaggtgattcaggagagggtggacctgatggtattcccggggagaggggacgtccgggactgccaggagctaagggtttc ccaggactggagggtcagccaggacttcctggaggaggatacggaatactcattgcaagacacagtcagaccactattgt accatcatgtccagctggcaccgtcaagttatgggacggctactcactggttcatatcatgggaaacggcaagagtcatg gacaagatctaggtacatccggtagctgcttgcgtcgtttccagaccatgcccttcatgttctgtgacatcaacaacgtg tgtaatctggcgtggaggaacgattacagttactggttatctacccttgagccaatgacggccatgatgaatcccataga ggggtcgcctctacagcggtacatcagtaggtgctccgtgtgtgaagcaccatcggaggtgatggcagtccatagccaaa cattaagaattccagattgtccaagaggatttagaagtttatgggaaggtttcagctttatgatgaattctggagctggt ggtcagggtgcaggcaattctttggcatcccctgggtcgtgcctggaggacttcagagccacacccattatcgagtgccg agggcggggctcttgtaattactacgctacgtcctatagtttctggttggcaaccattgatcagttcagtcaattccgtt cacctctctctgagacattaaaagcaggaaaccaaaggactagaataggacgatgcagagtctgtgctaggggataa |
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Protein
| Protein ID | pfu_aug2.0_19.1_29998.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29998.t1 MNSRIVILLVVLAATLLDVALGAACKGCGTTVCLCAGQKGIRGNRGLPGLRGPPGLPGFIGPEGPPGPRGIQGESGEDGA SGPKGDRGDMGLPGFTGVPGVPGENGRSGRPGQEGLQGPRGESGAPGLKGEPGDRVDSDVGEKGAPGEPGRTGQSGPRGI PGPPGDRGPYGDAGLPGETGTVGIPGEKGEMGETKPVENGMPGDPGPQGPPGPPGEILQIRTIPPEQILQGEVGEPGPIG PVGFSGIPGVTGIRGDDGRKGEPGAKGPPGFSGEQGRRGKRGKDGPQGEYGPKGMAGEKGLPGFPGLKGRQGPSGDIGYQ GPRGEKGLRGFKGEERREGTGLPGPRGPPGEFGPDGQPGYPGRDGAVGAVGRNGPPGLPGPDGLPGLRGPAGSSTPGERG DPGQVGEPCGVCPPGLPGLPGDSGDPGLDGLPGLDGQPGLPGLFGDVGFPGIPGLPGRNGEKGSLGPTGPRGRQGLPGPD GVLIGSLPLKMKGRPGEVGLVGTPGRDGSPGFPGETGRTGLPGRAGVNGDDGRPGLQGLDGLPGLPGEDGVPGMVGDSID GEVGRVGPKGFEGLPGFPGMKGFKGPKGEPGRPIVEQGKIGDIGEMGLPGLDGMDGLPGLPGMKGESGIPGESGRNGFPG MKGEPGFSGVPGERGQVGAKGFPGLPGLDGLPGLPGNKGQPGEEGLPGIPGERGLVGDPGREPLRPLPGRPGDPGFRGVD GLPGIPGERGRPGLDGLPGDKGIGGDPGVSGLPGLPGFKGERGGTLQGPPGAKGFRGRPGVPGETGFRGAPGDAGLPGLP GTDGETGTPGLPGFQGIDGEQGREGARGEPGLPGLPGLPGLSGPKGDRGATGPNGGPGIPGEQGQVGAFGDRGEPGLNGF PGQRGLPGRKGASGEPGFPGGPGRRGEPGFPGRDGEPGERGFPGEDGAPGRRGLDGPNGRKGDAGERGVSLPGQQGLPGR PGQDGLPGLDGLPGEPGPDGEMGRPGEDGIRGDSGFPGIDGEPGRQGFPGIKGERGVSGLPGVPGERGMVGEPGRQGFDG QPGVNGDVGPDGIPGERGRVGGPGDDGFRGRDGLPGLNGIKGFPGDNGEPGLPGFPGMKGNPGLPGLRGRPGERGLPGLE GLPGVPGERGPVGDIGFIGRPGSPGEDVFGQAGARGDFGLPGTDGLTGLKGLPGSPGLPGLPGLQGQKGNQGRSINARKG EPGDDGLFGFPGRQGEKGFPGRPGLPGIDGSKGGNGLPGFPGEDGQVGDDGLPGLFGEPGLDGIPGERGRIGDPGRDGEP GVPGFQGDPGRPGLPGFFGLKGEKGQPGDVGIPGPFPDPRPNINDKGERGFPGPRGLRGMKGQPGPQGQPGDVGIPGPFP DPRPNINDKGERGFPGPRGLRGMKGQPGPQGGDGPGGARGNPGDNGPVGIPGRKGDSGEGGPDGIPGERGRPGLPGAKGF PGLEGQPGLPGGGYGILIARHSQTTIVPSCPAGTVKLWDGYSLVHIMGNGKSHGQDLGTSGSCLRRFQTMPFMFCDINNV CNLAWRNDYSYWLSTLEPMTAMMNPIEGSPLQRYISRCSVCEAPSEVMAVHSQTLRIPDCPRGFRSLWEGFSFMMNSGAG GQGAGNSLASPGSCLEDFRATPIIECRGRGSCNYYATSYSFWLATIDQFSQFRSPLSETLKAGNQRTRIGRCRVCARG |
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