Gene
| Gene Model ID | pfu_aug2.0_19.1_29999 |
|---|---|
| Locus | scaffold19.1 : 465061 ... 516233 : + |
| To GenomeBrowser | scaffold19.1:465061..516233 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_9026.1_45985 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_29999.t1 | 25 | 1 | Collagen | 21 | 76 | 0.0 | 638.1 | 4.1e-12 | 3.1e-08 | 33.0 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 2 | Collagen | 66 | 124 | 0.0 | 638.1 | 1.0e-10 | 7.8e-07 | 28.5 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 3 | Collagen | 102 | 164 | 0.0 | 638.1 | 5.5e-10 | 4.1e-06 | 26.2 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 4 | Collagen | 179 | 235 | 0.0 | 638.1 | 5.1e-07 | 0.0038 | 16.7 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 5 | Collagen | 227 | 270 | 0.0 | 638.1 | 4.4e-09 | 3.3e-05 | 23.3 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 6 | Collagen | 275 | 333 | 0.0 | 638.1 | 1.9e-11 | 1.4e-07 | 30.9 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 7 | Collagen | 338 | 396 | 0.0 | 638.1 | 4.2e-11 | 3.1e-07 | 29.8 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 8 | Collagen | 389 | 447 | 0.0 | 638.1 | 1.7e-13 | 1.3e-09 | 37.4 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 9 | Collagen | 465 | 523 | 0.0 | 638.1 | 9.1e-13 | 6.7e-09 | 35.1 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 10 | Collagen | 498 | 558 | 0.0 | 638.1 | 9.8e-12 | 7.3e-08 | 31.8 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 11 | Collagen | 569 | 621 | 0.0 | 638.1 | 6.5e-12 | 4.8e-08 | 32.4 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 12 | Collagen | 614 | 672 | 0.0 | 638.1 | 1.9e-11 | 1.4e-07 | 30.9 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 13 | Collagen | 676 | 733 | 0.0 | 638.1 | 1.3e-13 | 9.3e-10 | 37.9 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 14 | Collagen | 724 | 782 | 0.0 | 638.1 | 1.4e-13 | 1.0e-09 | 37.8 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 15 | Collagen | 760 | 817 | 0.0 | 638.1 | 2.6e-11 | 1.9e-07 | 30.4 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 16 | Collagen | 811 | 868 | 0.0 | 638.1 | 1.0e-11 | 7.7e-08 | 31.7 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 17 | Collagen | 870 | 925 | 0.0 | 638.1 | 7.7e-13 | 5.7e-09 | 35.3 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 18 | Collagen | 930 | 987 | 0.0 | 638.1 | 1.7e-11 | 1.2e-07 | 31.1 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 19 | Collagen | 972 | 1030 | 0.0 | 638.1 | 7.7e-13 | 5.7e-09 | 35.3 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 20 | Collagen | 1020 | 1076 | 0.0 | 638.1 | 4.4e-09 | 3.3e-05 | 23.3 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 21 | Collagen | 1135 | 1180 | 0.0 | 638.1 | 0.0019 | 14.0 | 5.3 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 22 | Collagen | 1208 | 1258 | 0.0 | 638.1 | 4.2e-11 | 3.1e-07 | 29.8 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 23 | Collagen | 1238 | 1294 | 0.0 | 638.1 | 1.9e-11 | 1.4e-07 | 30.9 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 24 | Collagen | 1304 | 1359 | 0.0 | 638.1 | 1.2e-12 | 8.7e-09 | 34.7 |
| pfu_aug2.0_19.1_29999.t1 | 25 | 25 | Collagen | 1335 | 1389 | 0.0 | 638.1 | 1.1e-11 | 8.2e-08 | 31.6 |
| pfu_aug2.0_19.1_29999.t1 | 2 | 1 | C4 | 1392 | 1498 | 0.0 | 286.0 | 5.04467e-44 | 3.8e-40 | 136.3 |
| pfu_aug2.0_19.1_29999.t1 | 2 | 2 | C4 | 1501 | 1613 | 0.0 | 286.0 | 0.0 | 7.00649e-45 | 151.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_29999.t1 | gi|751781840|ref|XP_011200101.1| | PREDICTED: collagen alpha-1(IV) chain [Bactrocera dorsalis] | 0.0 |
| pfu_aug2.0_19.1_29999.t1 | gi|557773538|ref|XP_005186422.1| | PREDICTED: collagen alpha-1(IV) chain [Musca domestica] | 0.0 |
| pfu_aug2.0_19.1_29999.t1 | gi|749781458|ref|XP_011145011.1| | PREDICTED: collagen alpha-1(IV) chain [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_19.1_29999.t1 | gi|665798419|ref|XP_008547084.1| | PREDICTED: collagen alpha-2(IV) chain [Microplitis demolitor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_29999.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29999.t1 atgcaagatccaagggaatgcggtgctaattgtcaaacgaacggaggatgtaaatgtgtcggagagaaggggtccagggg aacacccggtgccctaggacccccgggtgaacaaggtatccaaggttacccaggtatggaagggctcccgggacccaagg gctcaaaaggtgaacccggacttataggaccactcggaccaaaaggaagcaggggtatcccgggaccccccggtcccaga ggaccagctggtctggacggatgcaatggaacagctggcgaaccaggacgcgagggtctctccggacctcagggtccacc aggatttgatggtccacctggaccaaagggtttctctggacctccgggaccaaggggttttgaaggcttcaaaggtgaaa gaggtattaagggaaacccaggtatcaatttagttggtatgaagggtgtacctggtccccctggacctcagggtcctcct gggcccccaggggaataccgtggggaattcactggtggaaacatcacagagcggggacccaaaggagatcgtggtactcc tggacctaggggaccaagtggacttcctggcctccccggtcagaaaggacagaagggtagtgatggcatgaaaggaatga tcggaatggcaggggaaaagggtgtgcccggaattgctggacctaggggagatcgcggtatggatggtttaccaggcctc aatggtttatcgggagaaaaaggagatcgtggtataactggattcaaaggagaaccaggtcttagaggagagccaggacc ggcaggggtaaggttaccgggtattgatggacttccgggaagagatggtttaccaggagagaagggagacccaggaccga ttggagaggcaggacgatcaattccaggcgcatctggtccaacaggattgcctggtatcaatggtagaccaggagataaa ggagagaagggattccctggacttccgggtattcctggtaattctacccgaggcagacccgggcttcccggtgcaaaagg agagaaaggtttctcaggacgaccaggaggcccaggaagggacggactcccaggtttacctggaacgaaaggtgacagag gtggatcttgccaggactgcaccccaggctttaaaggagagaaggggtcctctggactgccaggtagaccaggagtcccc ggagaaaggggaataactggaccgaaaggagataggggattaccgggcgaggaaggaagtccaggatttgctggtgatag aggagaaccaggagacagaggtttccctggggaaccaggacctgaaggacctccaggaaatgacgcaaatatcaataata tccgaatgcccgattgtcaaaagggagatccaggaccaagtggactaccaggaacaaagggagaacgaggtgtgtcaggt acacctggacccccaggattagagggtctccctggccttaaaggagataggggtcagcctggattacctggacgggatgg tgaaccgggatcacctggtctaccaggtgtacctggtcttaaaggagagcgtggtgttggtttgccaggattaccaggag ataggggtttaccaggtgacaatgggcttccgggcttaactggcatggaaggtcaaaagggagaaccaggagagtcattt acagtgaatccagatattctgaaaggtgttaaaggcgaacgtggtctaccaggaaatcctggtattccaggcagagatgg caggccagggataaaaggagaccgtggtaatccaggaattcctggaattgaaggccttcctggaatgaagggaggtcgtg gtgacgatggaatccccggagaatctggtcccaggggtttacctggacagaggggtgaccgaggcttggacggtggacct ggacaaccaggatttgatggaggaaaaggagaacctggaagatctggactgcctggactgagtggtgaaaagggagatcc aggtttaccaggacgtagccttgagggtccaaaaggagagcctggtctgccaggggaacagggagtgcgtggtccctcgg gacttcatggacaggatggacttccgggtcgtcctgggcttccaggaatgaaaggggaacctggactaagaggaaatgat ggattgcccggcataccaggagaaaggggagagagaggcccagagggaccatccggagaacgaggtataccaggagaaga cggacttcctgggttaccgggagctccaggttctaagggaagtccaggattgccaggagttgatggactaccaggtcaga aaggagattcaggattaccaggagagtctggaaggccaggactgccgggattagacggaccccaagggccaccaggatta ccaggccaggatggaataacaggactgccgggaccaaagggagaaatgggagttgtaggattcccaggcgagcctggacg tgacggtttacctggattgcccggtgtgaaaggcggtaaaggagataggggcttacctggcatcccaggagagcagggcg caacaggattgccaggtatgaagggagatcaaggtctgccagggattggaattccaggagaggatggtattcctggagag agagggcgagacggagccccaggccgtcctgggcccggagggcttaagggcaatcccggactaccaggattcccaggtct taaaggagagccaggtttaccaggaagaccaggagagtctggccgacccggacaggacggacttccaggaatgaaaggca cacctggtttggatggattgcccgggcaaagaggaggtaaaggtgagcctggtttgtcgggcattccagggagagacgga cagaaaggggagtctggattcccaggacagcccggcttatctggtctggatggacagaaaggagaaaggggcatcccagg tctaccaggaaatgacggagagcgtggagagccaggattcccaggaccagacggacgtccaggtcttccaggagtgaagg gagatataggacctgttggttcaacgggagccaaaggagagccaggtcgtagtttggagggtataaaaggagagccaggt ataccaggagaaagaggacgggacggtcttccaggaatgaaaggagaatcaggactgccaggacaagatggcttccccgg atctaagggagaacccggagcaccaggtattggattaccgggagctaagggagagcgaggattggatggactacctggtg agtctggagcccgtggtataccaggtgaggatggaggacccggaattccaggtagagacggtctgcccggtgataacggt ttacctggactccccggcatgaagggtgtaccaggattaccaggctctaaaggtgagtctggtcgaccaggccagccagg tttcccaggtgagaagggaggcagagggcaggatggtttacctgggctaccgggaattaaaggagcagaaggggaaccag gattaaacggaaatccaggggaaagaggtaccataggtcaaaagggtgagcccggcccacagggtcctcctgttgacata ccaagtaacttccgtattaagggagagcccggtgttccaggccttccaggacttgccggccttaaaggagaaccaggaca agtcggacccagaggattcccaggtgagtctggtcgaccaggccagccaggtttcccaggtgagaagggaggcagagggc aggatggtttacctgggctaccgggaatgaaaggagcagacggggaaccaggattaaacggaaatccaggggagagaggt accataggtcaaaagggtgagcccggcccacagggtcctcctgttgacataccaagtaacttccgtattaagggagagcc cggtgttccaggccttccaggacttgccggccttaaaggagaactaggacaagtcggacccagaggattcccaggtttac ccggacaagatggattaccaggagagaggggtgtggctggtttcccaggaatgaaaggcgagccaggacccaggggattc aatggtctaccaggacaagatggagtaccaggtcagcaaggtgtcccaggagagcccggattcccaggtccccccggagg atctgtaccctcaggattcctgtttgtacgacacagtcaaagtgacaccatccccgtttgtcctagacaactaactccgt tatgggaaggctacagtttactatatatcgaaggaaatgaaaggtcacagcatcaagacttaggttgggcaggttcatgt atgagacgattcagcacaatgccattcctattctgcaacaccaacaatgtttgtaactatgccagtcgtaacgacaaatc ctattggctgtccacgaacgccccaatgccaatgatgcctgttggtgaacaggaaattccacggtacatcagtagatgtg tcgtctgtgatgctccaactaatgtgatagccgtacacagtcaaactcttgtgttcccagaatgccccattggttggcag ggactttgggtcggatacagttttgccatgcacaccggcgctggaccaagcggtggcggtcaatcactctctagcccagg tagctgcttagaagatttccgtgccacaccctttattgagtgtaacggggctggtggcacgtgccacttctttgccaata aatacagcttctggctaacaactgtagaagctaatagtcaatttattacacctatacaacagacattaaaggccggtaat ttgagaactcgtgtatcaaggtgccaagtttgtatgaaacttcaataa |
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Protein
| Protein ID | pfu_aug2.0_19.1_29999.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_29999.t1 MQDPRECGANCQTNGGCKCVGEKGSRGTPGALGPPGEQGIQGYPGMEGLPGPKGSKGEPGLIGPLGPKGSRGIPGPPGPR GPAGLDGCNGTAGEPGREGLSGPQGPPGFDGPPGPKGFSGPPGPRGFEGFKGERGIKGNPGINLVGMKGVPGPPGPQGPP GPPGEYRGEFTGGNITERGPKGDRGTPGPRGPSGLPGLPGQKGQKGSDGMKGMIGMAGEKGVPGIAGPRGDRGMDGLPGL NGLSGEKGDRGITGFKGEPGLRGEPGPAGVRLPGIDGLPGRDGLPGEKGDPGPIGEAGRSIPGASGPTGLPGINGRPGDK GEKGFPGLPGIPGNSTRGRPGLPGAKGEKGFSGRPGGPGRDGLPGLPGTKGDRGGSCQDCTPGFKGEKGSSGLPGRPGVP GERGITGPKGDRGLPGEEGSPGFAGDRGEPGDRGFPGEPGPEGPPGNDANINNIRMPDCQKGDPGPSGLPGTKGERGVSG TPGPPGLEGLPGLKGDRGQPGLPGRDGEPGSPGLPGVPGLKGERGVGLPGLPGDRGLPGDNGLPGLTGMEGQKGEPGESF TVNPDILKGVKGERGLPGNPGIPGRDGRPGIKGDRGNPGIPGIEGLPGMKGGRGDDGIPGESGPRGLPGQRGDRGLDGGP GQPGFDGGKGEPGRSGLPGLSGEKGDPGLPGRSLEGPKGEPGLPGEQGVRGPSGLHGQDGLPGRPGLPGMKGEPGLRGND GLPGIPGERGERGPEGPSGERGIPGEDGLPGLPGAPGSKGSPGLPGVDGLPGQKGDSGLPGESGRPGLPGLDGPQGPPGL PGQDGITGLPGPKGEMGVVGFPGEPGRDGLPGLPGVKGGKGDRGLPGIPGEQGATGLPGMKGDQGLPGIGIPGEDGIPGE RGRDGAPGRPGPGGLKGNPGLPGFPGLKGEPGLPGRPGESGRPGQDGLPGMKGTPGLDGLPGQRGGKGEPGLSGIPGRDG QKGESGFPGQPGLSGLDGQKGERGIPGLPGNDGERGEPGFPGPDGRPGLPGVKGDIGPVGSTGAKGEPGRSLEGIKGEPG IPGERGRDGLPGMKGESGLPGQDGFPGSKGEPGAPGIGLPGAKGERGLDGLPGESGARGIPGEDGGPGIPGRDGLPGDNG LPGLPGMKGVPGLPGSKGESGRPGQPGFPGEKGGRGQDGLPGLPGIKGAEGEPGLNGNPGERGTIGQKGEPGPQGPPVDI PSNFRIKGEPGVPGLPGLAGLKGEPGQVGPRGFPGESGRPGQPGFPGEKGGRGQDGLPGLPGMKGADGEPGLNGNPGERG TIGQKGEPGPQGPPVDIPSNFRIKGEPGVPGLPGLAGLKGELGQVGPRGFPGLPGQDGLPGERGVAGFPGMKGEPGPRGF NGLPGQDGVPGQQGVPGEPGFPGPPGGSVPSGFLFVRHSQSDTIPVCPRQLTPLWEGYSLLYIEGNERSQHQDLGWAGSC MRRFSTMPFLFCNTNNVCNYASRNDKSYWLSTNAPMPMMPVGEQEIPRYISRCVVCDAPTNVIAVHSQTLVFPECPIGWQ GLWVGYSFAMHTGAGPSGGGQSLSSPGSCLEDFRATPFIECNGAGGTCHFFANKYSFWLTTVEANSQFITPIQQTLKAGN LRTRVSRCQVCMKLQ |
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