Gene
| Gene Model ID | pfu_aug2.0_19.1_30001 |
|---|---|
| Locus | scaffold19.1 : 537733 ... 558436 : - |
| To GenomeBrowser | scaffold19.1:537733..558436 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_9828.1_24634 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_30001.t1 | 1 | 1 | eRF1_1 | 13 | 144 | 1.6e-28 | 98.9 | 6.4e-32 | 3.2e-28 | 97.9 |
| pfu_aug2.0_19.1_30001.t1 | 1 | 1 | eRF1_2 | 149 | 280 | 0.0 | 159.5 | 0.0 | 0.0 | 158.9 |
| pfu_aug2.0_19.1_30001.t1 | 1 | 1 | eRF1_3 | 284 | 421 | 1.4e-40 | 138.0 | 5.60519e-44 | 2.8e-40 | 137.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_30001.t1 | gi|676462394|ref|XP_009056254.1| | hypothetical protein LOTGIDRAFT_216289 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_19.1_30001.t1 | gi|193589590|ref|XP_001948380.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1 isoform X2 [Acyrthosiphon pisum] | 0.0 |
| pfu_aug2.0_19.1_30001.t1 | gi|641665243|ref|XP_008183302.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1 isoform X1 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_30001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_30001.t1 atggctactaacggagacgtcggagagagcagtgcggatagaaatgtagaaatatggaaaatcaaaaagctgataaagag tttggaggcagctcgaggcaatggtaccagcatgatttcactgatcattccacctaaagaccagatttcacgagtagcta agatgttagcagatgaatttggtaccgcttccaacatcaagagcagagtcaatcgtctatctgtacttggagcaatcaca tctgtacagcaaaggctcaaactatacaataaagtgccaccaaatggattggtaatctactgtggtaccatagtcacaga tgaaggcaaagaaaagaaagtgaatatagactttgagccattcaggccgatcaatacgtccctgtatttatgtgataata aatttcacacagaggctttaacggccctcttggcagacgataataagtttggttttattgtgatggacggtaacggagcg ttatttggtacactgtcaggaaatacacgagaagttctccacaaattcacagtagatttacccaaaaaacacgggagagg aggtcagtcagctttacgttttgcccgattacgtatggagaaacgtcacaattatgttcgtaaagtagcggaagtcgcag tacaacttttcatcaccaacgacaaaccaaacatagctggtctcgtcctagcaggatctgccgatttcaaaacagaactt agccagtctgacatgtttgaccctcgacttcaagccaaaatcatcaaaatagtagacgtgtcgtatggaggagagaacgg attcaatcaagccatagaattagccgctgactccttggcaaacgtcaaattcatacaggaaaagaaattaataggtcgtt actttgaagaaatctcacaagacacggggaaatattgctttggcgttgacgatactctaaaagcattagagatgggtgct gtagataccctaattgtatgggaaaaccttgatatcactagatatgtattaaagaatcacacaacggaagttgaaaatat tctgtacttgagacctgagcaagaaaaagacaaaacccattttattgacaaagatacgggtgtagaattggaattagcag aacagatgcctttactagaatggtttgccaataattacaaaaattttggagcaacgttagaaatcataacagataaatcc caagagggtgcacaatttgtccgaggcttcggtggtataggaggaattttacgatatcaagtggacttccaggtgttcag tgctaatccggatggatttgatgatgactacgatctagacgattattga |
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Protein
| Protein ID | pfu_aug2.0_19.1_30001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_30001.t1 MATNGDVGESSADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAIT SVQQRLKLYNKVPPNGLVIYCGTIVTDEGKEKKVNIDFEPFRPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGA LFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVAVQLFITNDKPNIAGLVLAGSADFKTEL SQSDMFDPRLQAKIIKIVDVSYGGENGFNQAIELAADSLANVKFIQEKKLIGRYFEEISQDTGKYCFGVDDTLKALEMGA VDTLIVWENLDITRYVLKNHTTEVENILYLRPEQEKDKTHFIDKDTGVELELAEQMPLLEWFANNYKNFGATLEIITDKS QEGAQFVRGFGGIGGILRYQVDFQVFSANPDGFDDDYDLDDY |
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