Gene
| Gene Model ID | pfu_aug2.0_19.1_30005 |
|---|---|
| Locus | scaffold19.1 : 583932 ... 617536 : - |
| To GenomeBrowser | scaffold19.1:583932..617536 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | pfu_aug1.0_1303.1_07891 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19.1_30005.t3 | 3 | 1 | I-set | 40 | 121 | 1.69557e-43 | 146.3 | 1.6e-14 | 1.7e-11 | 43.7 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 1 | Ig_2 | 43 | 111 | 1.3e-25 | 89.2 | 1.6e-08 | 1.7e-05 | 24.8 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 1 | V-set | 43 | 122 | 5.6e-15 | 55.2 | 2.1e-05 | 0.022 | 14.6 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 1 | Ig_3 | 45 | 103 | 1.6e-19 | 70.1 | 2.2e-06 | 0.0023 | 18.4 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 1 | ig | 49 | 102 | 2.9e-13 | 49.7 | 3.8e-06 | 0.004 | 17.2 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 1 | Herpes_gE | 79 | 134 | 9.6e-06 | 24.1 | 0.0045 | 4.8 | 5.3 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 2 | Ig_2 | 153 | 233 | 1.3e-25 | 89.2 | 6.5e-12 | 6.9e-09 | 35.7 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 2 | V-set | 155 | 223 | 5.6e-15 | 55.2 | 4.4e-06 | 0.0046 | 16.8 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 2 | I-set | 159 | 233 | 1.69557e-43 | 146.3 | 1.1e-18 | 1.1e-15 | 57.1 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 2 | ig | 159 | 218 | 2.9e-13 | 49.7 | 8.8e-08 | 9.3e-05 | 22.4 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 2 | Ig_3 | 160 | 220 | 1.6e-19 | 70.1 | 2.7e-07 | 0.00029 | 21.2 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 3 | Ig_2 | 240 | 336 | 1.3e-25 | 89.2 | 1.6e-09 | 1.7e-06 | 28.0 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 3 | Ig_3 | 240 | 328 | 1.6e-19 | 70.1 | 2.1e-11 | 2.2e-08 | 34.4 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 3 | I-set | 244 | 341 | 1.69557e-43 | 146.3 | 9.4e-14 | 9.9e-11 | 41.3 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 3 | V-set | 246 | 333 | 5.6e-15 | 55.2 | 5.0e-08 | 5.3e-05 | 23.0 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 2 | Herpes_gE | 278 | 346 | 9.6e-06 | 24.1 | 0.0027 | 2.8 | 6.0 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 3 | ig | 298 | 326 | 2.9e-13 | 49.7 | 0.00056 | 0.59 | 10.2 |
| pfu_aug2.0_19.1_30005.t3 | 3 | 3 | Herpes_gE | 342 | 401 | 9.6e-06 | 24.1 | 6.3e-05 | 0.067 | 11.4 |
| pfu_aug2.0_19.1_30005.t3 | 2 | 1 | Pkinase_Tyr | 467 | 541 | 0.0 | 291.3 | 5.9e-20 | 6.3e-17 | 61.5 |
| pfu_aug2.0_19.1_30005.t3 | 2 | 1 | Pkinase | 469 | 540 | 9.2e-39 | 133.1 | 2.7e-10 | 2.9e-07 | 29.9 |
| pfu_aug2.0_19.1_30005.t3 | 2 | 2 | Pkinase | 539 | 695 | 9.2e-39 | 133.1 | 1.7e-32 | 1.8e-29 | 102.6 |
| pfu_aug2.0_19.1_30005.t3 | 2 | 2 | Pkinase_Tyr | 540 | 697 | 0.0 | 291.3 | 0.0 | 0.0 | 230.0 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 4 | Ig_2 | 674 | 684 | 1.3e-25 | 89.2 | 5.7 | 6100.0 | -2.6 |
| pfu_aug2.0_19.1_30005.t3 | 4 | 4 | Ig_3 | 675 | 686 | 1.6e-19 | 70.1 | 2.8 | 3000.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19.1_30005.t3 | gi|719768446|ref|XP_010218386.1| | PREDICTED: fibroblast growth factor receptor 3 [Tinamus guttatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_19.1_30005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_30005.t1 atgggcttttaccatcaactattcaccaacgttgcaaagggatacttacttttgtgtctgatctgttccatagattgtag aaaaggtgcgccagaattaaggggcggatccaggacctataacagaattgaagtagaagaaaatagcaaaatcaaactta agtgcaaagtttcgggaaaacccaaaccttataaagtctggtttatcaacaatactcaaatatcaactcatagcaacgat aggttctcacttcgggacaatggcctagtaattttacctacgacattgaatgattcaggaacgtactctatgctagctga gaatccccatggcaatgtatggtgtaatcacacgcttgtagttgtaccggaagaggttgaagatgtagagaaaagaccgt cctgcaacatcgaaggtaaaccaagatggcggaacttcaaagaaatgggagactaccaatctttgccgactcataccaag gccgagttgagatgtcccgcatgtggaacaccggaaccaaacatcacgtggtacaagggacacgaacgtttgagtgtaaa cgatcggataaagaacaagtaccgtacccggggatggaagctttacatcgactccctgaatgttcgagatgaggggaaat acacatgtgtggtagagaacaagttcggaaagatcaactacaccatagaaatcaatgtcatcgatcgtgtgctcacaaaa ccagtcatccgtggcccgaccaaccagaccgtgacggtgggcagcaatgtcaagttcgagtgcactgtggtgatgagcgg attacaaccccacattcagtgggtcaagcacttcaaagtcaacgattcttacatgtctccctcgggggacccctatatca cactgctacagcaatcaaatttcaatgtcactgacccagaaattctacgcctactcaacgtgacgcacgatgatgcagga tggtacacatgtttggttagcaacagtctgggaaggtcttatcaaagtgcttggttgaccgtagaggagatagaagctgc atggttgtcacaaaatcttacagaggatgaattttttaatccagttacacccgagacgcagcgatcagtccagaatttga aggaaggaacagaacaaaccgtcattatcgtcgtgggaacatcagtcgcagccactctcctaattgtatttgttgtgatg gccgtttgtttccatagacatcgtcgtaacggcaaaaattacagaccaatcaaacgtgtcattgtcatgaaaccaaatga gttttactatccgaacaagagcagtgcttacgagggcagtcctatgttagtacccacagttagaatcgaggctggaagtc gtaggagactgtcgtctgatctcactgtcatgtccgagtatgaccttcctctcgataaaacatgggaaatctgtagagaa aagttgttgatgggtgcgccccttggagaaggagcttttggattggttatgaaggcagaggcttctgggataggaaataa aaatggaacaactacagtagctgttaaaatgttgaaagaggatgccacggatcgtgagttgacagatcttatacaggaaa tggaagtgatgaagctgatcggcagccataaaaatatcattaacttactcggctgctgtacacaaaatgagaaagatcta atatcattcgcttaccagatagcaagaggaatggactacctagcctcaagacagtgtatacacagagatcttgccgctag gaatgttttagtgtcggaggactacgtcctaaaaattgcagactttggtctaactagaaatattaccaacatcgactatt ataggaaaacgggtgatggtcgtttgccagtaaagtggatggcccctgaagctttgttcgatagaaagtatacttctaag agtgatgtatggtcatttggtgtactgctatgggaaatcttcacactgggcggcaacccctacccctccgtccctgttga gaggctttttgagctgctaagggaggggcatcgaatggagagacccccctacgcctcccaggaaatgtataacatgatgc ttcattgctgggccaccaacccaacccgccgtcccacctttatcaacctggttaacgagcttgacaagatgttaagctcg cggggtgaggaatatttggatttagagccattggaaactcctataagcacatcagacagtcagtattcctcaatgtcacg gagttttagtagtgttacggacgatattatgggtgcaaacttaacgactagcgcaagtgactcggatagaaacatgagaa aggatatttctttccaacatagagtagctttagtatcaaattcaagatgtgaatatgcaatgaaatccaaacaagtattg tctatgatcttgacctgcattaaatgtcgagaggtcaaggtcagctatgaaagcaccgcaagtgtcttaggtgtacataa taataaatggtga |
|
| Transcript ID | pfu_aug2.0_19.1_30005.t2 |
| Definition | - |
>pfu_aug2.0_19.1_30005.t2 atgggcttttaccatcaactattcaccaacgttgcaaagggatacttacttttgtgtctgatctgttccatagattgtag aaaaggtgcgccagaattaaggggcggatccaggacctataacagaattgaagtagaagaaaatagcaaaatcaaactta agtgcaaagtttcgggaaaacccaaaccttataaagtctggtttatcaacaatactcaaatatcaactcatagcaacgat aggttctcacttcgggacaatggcctagtaattttacctacgacattgaatgattcaggaacgtactctatgctagctga gaatccccatggcaatgtatggtgtaatcacacgcttgtagttgtaccggaagaggttgaagatgtagagaaaagaccgt cctgcaacatcgaaggtaaaccaagatggcggaacttcaaagaaatgggagactaccaatctttgccgactcataccaag gccgagttgagatgtcccgcatgtggaacaccggaaccaaacatcacgtggtacaagggacacgaacgtttgagtgtaaa cgatcggataaagaacaagtaccgtacccggggatggaagctttacatcgactccctgaatgttcgagatgaggggaaat acacatgtgtggtagagaacaagttcggaaagatcaactacaccatagaaatcaatgtcatcgatcgtgtgctcacaaaa ccagtcatccgtggcccgaccaaccagaccgtgacggtgggcagcaatgtcaagttcgagtgcactgtggtgatgagcgg attacaaccccacattcagtgggtcaagcacttcaaagtcaacgattcttacatgtctccctcgggggacccctatatca cactgctacagcaatcaaatttcaatgtcactgacccagaaattctacgcctactcaacgtgacgcacgatgatgcagga tggtacacatgtttggttagcaacagtctgggaaggtcttatcaaagtgcttggttgaccgtagaggagatagaagctgc atggttgtcacaaaatcttacagaggatgaattttttaatccagttacacccgagacgcagcgatcagtccagaatttga aggaaggaacagaacaaaccgtcattatcgtcgtgggaacatcagtcgcagccactctcctaattgtatttgttgtgatg gccgtttgtttccatagacatcgtcgtaacggcaaaaattacagaccaatcaaacgtgtcattgtcatgaaaccaaatga gttttactatccgaacaagagcagtgcttacgagggcagtcctatgttagtacccacagttagaatcgaggctggaagtc gtaggagactgtcgtctgatctcactgtcatgtccgagtatgaccttcctctcgataaaacatgggaaatctgtagagaa aagttgttgatgggtgcgccccttggagaaggagcttttggattggttatgaaggcagaggcttctgggataggaaataa aaatggaacaactacagtagctgttaaaatgttgaaagaggatgccacggatcgtgagttgacagatcttatacaggaaa tggaagtgatgaagctgatcggcagccataaaaatatcattaacttactcggctgctgtacacaaaatgagaaagatcta atatcattcgcttaccagatagcaagaggaatggactacctagcctcaagacagtgtatacacagagatcttgccgctag gaatgttttagtgtcggaggactacgtcctaaaaattgcagactttggtctaactagaaatattaccaacatcgactatt ataggaaaacgggtgatggtcgtttgccagtaaagtggatggcccctgaagctttgttcgatagaaagtatacttctaag agtgatgtatggtcatttggtgtactgctatgggaaatcttcacactgggcggcaacccctacccctccgtccctgttga gaggctttttgagctgctaagggaggggcatcgaatggagagacccccctacgcctcccaggaaatgtataacatgatgc ttcattgctgggccaccaacccaacccgccgtcccacctttatcaacctggttaacgagcttgacaagatgttaagctcg cggggtgaggtgagtgaagacagcactgatcccccaacgaaatcgggaaaattcttggcaaagttgatacatgaatattt ggatttagagccattggaaactcctataagcacatcagacagtcagtattcctcaatgtcacggagttttagtagtgtta cggacgatattatgggtgcaaacttaacgactagcgcaagtgactcggatagaaacatgagaaaggatatttctttccaa catagagtagctttagtatcaaattcaagatgtgaatatgcaatgaaatccaaacaagtattgtctatgatcttgacctg cattaaatgtcgagaggtcaaggtcagctatgaaagcaccgcaagtgtcttaggtgtacataataataaatggtga |
|
| Transcript ID | pfu_aug2.0_19.1_30005.t3 |
| Definition | - |
>pfu_aug2.0_19.1_30005.t3 atgggcttttaccatcaactattcaccaacgttgcaaagggatacttacttttgtgtctgatctgttccatagattgtag aaaaggtgcgccagaattaaggggcggatccaggacctataacagaattgaagtagaagaaaatagcaaaatcaaactta agtgcaaagtttcgggaaaacccaaaccttataaagtctggtttatcaacaatactcaaatatcaactcatagcaacgat aggttctcacttcgggacaatggcctagtaattttacctacgacattgaatgattcaggaacgtactctatgctagctga gaatccccatggcaatgtatggtgtaatcacacgcttgtagttgtaccggaagaggttgaagatgtagagaaaagaccgt cctgcaacatcgaaggtaaaccaagatggcggaacttcaaagaaatgggagactaccaatctttgccgactcataccaag gccgagttgagatgtcccgcatgtggaacaccggaaccaaacatcacgtggtacaagggacacgaacgtttgagtgtaaa cgatcggataaagaacaagtaccgtacccggggatggaagctttacatcgactccctgaatgttcgagatgaggggaaat acacatgtgtggtagagaacaagttcggaaagatcaactacaccatagaaatcaatgtcatcgatcgtgtgctcacaaaa ccagtcatccgtggcccgaccaaccagaccgtgacggtgggcagcaatgtcaagttcgagtgcactgtggtgatgagcgg attacaaccccacattcagtgggtcaagcacttcaaagtcaacgattcttacatgtctccctcgggggacccctatatca cactgctacagcaatcaaatttcaatgtcactgacccagaaattctacgcctactcaacgtgacgcacgatgatgcagga tggtacacatgtttggttagcaacagtctgggaaggtcttatcaaagtgcttggttgaccgtagaggatccagttacacc cgagacgcagcgatcagtccagaatttgaaggaaggaacagaacaaaccgtcattatcgtcgtgggaacatcagtcgcag ccactctcctaattgtatttgttgtgatggccgtttgtttccatagacatcgtcgtaacggcaaaaattacagaccaatc aaacgtgtcattgtcatgaaaccaaatgagttttactatccgaacaagagcagtgcttacgagggcagtcctatgttagt acccacagttagaatcgaggctggaagtcgtaggagactgtcgtctgatctcactgtcatgtccgagtatgaccttcctc tcgataaaacatgggaaatctgtagagaaaagttgttgatgggtgcgccccttggagaaggagcttttggattggttatg aaggcagaggcttctgggataggaaataaaaatggaacaactacagtagctgttaaaatgttgaaagaggatgccacgga tcgtgagttgacagatcttatacaggaaatggaagtgatgaagctgatcggcagccataaaaatatcattaacttactcg gctgctgtacacaaaatgagaaagatctaatatcattcgcttaccagatagcaagaggaatggactacctagcctcaaga cagtgtatacacagagatcttgccgctaggaatgttttagtgtcggaggactacgtcctaaaaattgcagactttggtct aactagaaatattaccaacatcgactattataggaaaacgggtgatggtcgtttgccagtaaagtggatggcccctgaag ctttgttcgatagaaagtatacttctaagagtgatgtatggtcatttggtgtactgctatgggaaatcttcacactgggc ggcaacccctacccctccgtccctgttgagaggctttttgagctgctaagggaggggcatcgaatggagagaccccccta cgcctcccaggaaatgtataacatgatgcttcattgctgggccaccaacccaacccgccgtcccacctttatcaacctgg ttaacgagcttgacaagatgttaagctcgcggggtgaggaatatttggatttagagccattggaaactcctataagcaca tcagacagtcagtattcctcaatgtcacggagttttagtagtgttacggacgatattatgggtgcaaacttaacgactag cgcaagtgactcggatagaaacatgagaaaggatatttctttccaacatagagtagctttagtatcaaattcaagatgtg aatatgcaatgaaatccaaacaagtattgtctatgatcttgacctgcattaaatgtcgagaggtcaaggtcagctatgaa agcaccgcaagtgtcttaggtgtacataataataaatggtga |
|
Protein
| Protein ID | pfu_aug2.0_19.1_30005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19.1_30005.t1 MGFYHQLFTNVAKGYLLLCLICSIDCRKGAPELRGGSRTYNRIEVEENSKIKLKCKVSGKPKPYKVWFINNTQISTHSND RFSLRDNGLVILPTTLNDSGTYSMLAENPHGNVWCNHTLVVVPEEVEDVEKRPSCNIEGKPRWRNFKEMGDYQSLPTHTK AELRCPACGTPEPNITWYKGHERLSVNDRIKNKYRTRGWKLYIDSLNVRDEGKYTCVVENKFGKINYTIEINVIDRVLTK PVIRGPTNQTVTVGSNVKFECTVVMSGLQPHIQWVKHFKVNDSYMSPSGDPYITLLQQSNFNVTDPEILRLLNVTHDDAG WYTCLVSNSLGRSYQSAWLTVEEIEAAWLSQNLTEDEFFNPVTPETQRSVQNLKEGTEQTVIIVVGTSVAATLLIVFVVM AVCFHRHRRNGKNYRPIKRVIVMKPNEFYYPNKSSAYEGSPMLVPTVRIEAGSRRRLSSDLTVMSEYDLPLDKTWEICRE KLLMGAPLGEGAFGLVMKAEASGIGNKNGTTTVAVKMLKEDATDRELTDLIQEMEVMKLIGSHKNIINLLGCCTQNEKDL ISFAYQIARGMDYLASRQCIHRDLAARNVLVSEDYVLKIADFGLTRNITNIDYYRKTGDGRLPVKWMAPEALFDRKYTSK SDVWSFGVLLWEIFTLGGNPYPSVPVERLFELLREGHRMERPPYASQEMYNMMLHCWATNPTRRPTFINLVNELDKMLSS RGEEYLDLEPLETPISTSDSQYSSMSRSFSSVTDDIMGANLTTSASDSDRNMRKDISFQHRVALVSNSRCEYAMKSKQVL SMILTCIKCREVKVSYESTASVLGVHNNKW |
|
| Protein ID | pfu_aug2.0_19.1_30005.t2 |
| Definition | - |
>pfu_aug2.0_19.1_30005.t2 MGFYHQLFTNVAKGYLLLCLICSIDCRKGAPELRGGSRTYNRIEVEENSKIKLKCKVSGKPKPYKVWFINNTQISTHSND RFSLRDNGLVILPTTLNDSGTYSMLAENPHGNVWCNHTLVVVPEEVEDVEKRPSCNIEGKPRWRNFKEMGDYQSLPTHTK AELRCPACGTPEPNITWYKGHERLSVNDRIKNKYRTRGWKLYIDSLNVRDEGKYTCVVENKFGKINYTIEINVIDRVLTK PVIRGPTNQTVTVGSNVKFECTVVMSGLQPHIQWVKHFKVNDSYMSPSGDPYITLLQQSNFNVTDPEILRLLNVTHDDAG WYTCLVSNSLGRSYQSAWLTVEEIEAAWLSQNLTEDEFFNPVTPETQRSVQNLKEGTEQTVIIVVGTSVAATLLIVFVVM AVCFHRHRRNGKNYRPIKRVIVMKPNEFYYPNKSSAYEGSPMLVPTVRIEAGSRRRLSSDLTVMSEYDLPLDKTWEICRE KLLMGAPLGEGAFGLVMKAEASGIGNKNGTTTVAVKMLKEDATDRELTDLIQEMEVMKLIGSHKNIINLLGCCTQNEKDL ISFAYQIARGMDYLASRQCIHRDLAARNVLVSEDYVLKIADFGLTRNITNIDYYRKTGDGRLPVKWMAPEALFDRKYTSK SDVWSFGVLLWEIFTLGGNPYPSVPVERLFELLREGHRMERPPYASQEMYNMMLHCWATNPTRRPTFINLVNELDKMLSS RGEVSEDSTDPPTKSGKFLAKLIHEYLDLEPLETPISTSDSQYSSMSRSFSSVTDDIMGANLTTSASDSDRNMRKDISFQ HRVALVSNSRCEYAMKSKQVLSMILTCIKCREVKVSYESTASVLGVHNNKW |
|
| Protein ID | pfu_aug2.0_19.1_30005.t3 |
| Definition | - |
>pfu_aug2.0_19.1_30005.t3 MGFYHQLFTNVAKGYLLLCLICSIDCRKGAPELRGGSRTYNRIEVEENSKIKLKCKVSGKPKPYKVWFINNTQISTHSND RFSLRDNGLVILPTTLNDSGTYSMLAENPHGNVWCNHTLVVVPEEVEDVEKRPSCNIEGKPRWRNFKEMGDYQSLPTHTK AELRCPACGTPEPNITWYKGHERLSVNDRIKNKYRTRGWKLYIDSLNVRDEGKYTCVVENKFGKINYTIEINVIDRVLTK PVIRGPTNQTVTVGSNVKFECTVVMSGLQPHIQWVKHFKVNDSYMSPSGDPYITLLQQSNFNVTDPEILRLLNVTHDDAG WYTCLVSNSLGRSYQSAWLTVEDPVTPETQRSVQNLKEGTEQTVIIVVGTSVAATLLIVFVVMAVCFHRHRRNGKNYRPI KRVIVMKPNEFYYPNKSSAYEGSPMLVPTVRIEAGSRRRLSSDLTVMSEYDLPLDKTWEICREKLLMGAPLGEGAFGLVM KAEASGIGNKNGTTTVAVKMLKEDATDRELTDLIQEMEVMKLIGSHKNIINLLGCCTQNEKDLISFAYQIARGMDYLASR QCIHRDLAARNVLVSEDYVLKIADFGLTRNITNIDYYRKTGDGRLPVKWMAPEALFDRKYTSKSDVWSFGVLLWEIFTLG GNPYPSVPVERLFELLREGHRMERPPYASQEMYNMMLHCWATNPTRRPTFINLVNELDKMLSSRGEEYLDLEPLETPIST SDSQYSSMSRSFSSVTDDIMGANLTTSASDSDRNMRKDISFQHRVALVSNSRCEYAMKSKQVLSMILTCIKCREVKVSYE STASVLGVHNNKW |
|