Gene
| Gene Model ID | pfu_aug2.0_1914.1_15304 |
|---|---|
| Locus | scaffold1914.1 : 1 ... 17092 : + |
| To GenomeBrowser | scaffold1914.1:1..17092 |
| Genes list of scaffold | scaffold1914.1 |
| Synonym | pfu_aug1.0_6151.1_23958 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial-like | GO:0005743 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1914.1_15304.t1 | 1 | 1 | Ribosomal_L21p | 112 | 208 | 2.5e-16 | 59.5 | 3.7e-20 | 5.5e-16 | 58.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1914.1_15304.t1 | gi|564236424|ref|XP_006275116.1| | PREDICTED: 39S ribosomal protein L21, mitochondrial-like [Alligator mississippiensis] | 1.0e-36 |
| pfu_aug2.0_1914.1_15304.t1 | gi|557778584|ref|XP_005188921.1| | PREDICTED: 39S ribosomal protein L21, mitochondrial [Musca domestica] | 3.0e-36 |
| pfu_aug2.0_1914.1_15304.t1 | gi|591363828|ref|XP_007056816.1| | PREDICTED: 39S ribosomal protein L21, mitochondrial-like [Chelonia mydas] | 8.0e-36 |
| pfu_aug2.0_1914.1_15304.t1 | gi|557267741|ref|XP_006019241.1| | PREDICTED: 39S ribosomal protein L21, mitochondrial-like [Alligator sinensis] | 1.0e-35 |
| pfu_aug2.0_1914.1_15304.t1 | gi|558201955|ref|XP_006131729.1| | PREDICTED: 39S ribosomal protein L21, mitochondrial-like [Pelodiscus sinensis] | 2.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_1914.1_15304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1914.1_15304.t1 gttcaaaactacaagcgtctgaaaatggcaggaggtcgagctaacttgatattcaaacagattttttcactaatatctgg cgatgcacacgttcaaacacccaaaattttggcttgtggacggacagcgttatgcagggcagttggaagccaaagacatt tagatgtcaacttagagagatccttacatacctcagtcaaacttccacagagatgtcaagagtacagcacagttacagct acacaggtagaaaaggaatctttatccaaatatggcactgagctgatagaacaggtaaataacactatacagtccccaga tgttggtcgattgtttgccgtcattcatttgagggggaatcaacgtaaggtcacgactgaagacattattattgtgaatg gtgattttccacctacagttggagaaaggataaggctcgaaaaggtgctgatggttggagggaaggatttttctcttatt ggaagacctctgctgagccgcaacgttgtgaaggtagaagcaacagtgattgaaaagacactatcaaacttccgtgtttc cttcaattatcttaatggcaaaaactacaaacgttttaaagccaaacgtaaccctcagaccatgttagttatcaactcta tagaattacaaaatttacagactggagtaagtgatacttaa |
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Protein
| Protein ID | pfu_aug2.0_1914.1_15304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1914.1_15304.t1 VQNYKRLKMAGGRANLIFKQIFSLISGDAHVQTPKILACGRTALCRAVGSQRHLDVNLERSLHTSVKLPQRCQEYSTVTA TQVEKESLSKYGTELIEQVNNTIQSPDVGRLFAVIHLRGNQRKVTTEDIIIVNGDFPPTVGERIRLEKVLMVGGKDFSLI GRPLLSRNVVKVEATVIEKTLSNFRVSFNYLNGKNYKRFKAKRNPQTMLVINSIELQNLQTGVSDT |
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