Gene
| Gene Model ID | pfu_aug2.0_1921.1_05316 |
|---|---|
| Locus | scaffold1921.1 : 42455 ... 52025 : - |
| To GenomeBrowser | scaffold1921.1:42455..52025 |
| Genes list of scaffold | scaffold1921.1 |
| Synonym | pfu_aug1.0_7.1_14675 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras small monomeric gtpase | GO:0006810 GO:0043231 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1921.1_05316.t1 | 1 | 1 | Arf | 21 | 178 | 2.1e-11 | 43.3 | 1.8e-14 | 2.7e-11 | 43.0 |
| pfu_aug2.0_1921.1_05316.t1 | 1 | 1 | GTP_EFTU | 22 | 177 | 8.8e-09 | 35.0 | 7.9e-11 | 1.2e-07 | 31.3 |
| pfu_aug2.0_1921.1_05316.t1 | 1 | 1 | Ras | 23 | 179 | 0.0 | 184.6 | 0.0 | 0.0 | 184.4 |
| pfu_aug2.0_1921.1_05316.t1 | 1 | 1 | Miro | 23 | 137 | 3.0e-20 | 72.8 | 2.9e-23 | 4.3e-20 | 72.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1921.1_05316.t1 | gi|145251179|ref|XP_001397103.1| | Ras-related protein Rab-6A [Aspergillus niger CBS 513.88] | 0.0 |
| pfu_aug2.0_1921.1_05316.t1 | gi|255953207|ref|XP_002567356.1| | Pc21g02920 [Penicillium rubens Wisconsin 54-1255] | 0.0 |
| pfu_aug2.0_1921.1_05316.t1 | gi|169762832|ref|XP_001727316.1| | Ras-related protein Rab-6A [Aspergillus oryzae RIB40] | 0.0 |
| pfu_aug2.0_1921.1_05316.t1 | gi|631232917|ref|XP_007911381.1| | putative ras-like protein rab-6a protein [Togninia minima UCRPA7] | 0.0 |
| pfu_aug2.0_1921.1_05316.t1 | gi|615428394|ref|XP_007588945.1| | putative ras small monomeric gtpase protein [Neofusicoccum parvum UCRNP2] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1921.1_05316.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1921.1_05316.t1 atggtagatcgaaaaaatgacaatcttgattgtctcagtataaaatgcgatgacgtcatcaaggtcaaggtcgttgtcat tggagatgtctcagttggaaaaacttcacttgcaactagatttacaaaacaagtttttgatgaaagagctagtcatacaa tcggagccagttactatgtacgaacgatcgagatagaggacagaagggttctattccagatttgggatacggcgggccag gagaggttccggagcttagtgcctatgtacttaagagacacaaaaatcgcaataattgtatatgatatatcatctaaaaa atcctttgagagtatggaccattggaaaagagagttgtctgccagtgctccctcggatactatagtggctcttgtaggaa ataaatgtgatttacatctgaagagggaagtggattctaagcatggaagagcatacgcaactaggcatggtatgatgttt ctggaaacctctgcaaaattaggcaccaacattgatgagcttttccaccacttaggagtttctgttgccgaaaacacact ctcattttcttcattggacaagacacctatagacgttagaaggattacaagaccaataaacatttcaccgaaggaggaag agactaaaagcagatgttgtcgtagtggacactaa |
|
Protein
| Protein ID | pfu_aug2.0_1921.1_05316.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1921.1_05316.t1 MVDRKNDNLDCLSIKCDDVIKVKVVVIGDVSVGKTSLATRFTKQVFDERASHTIGASYYVRTIEIEDRRVLFQIWDTAGQ ERFRSLVPMYLRDTKIAIIVYDISSKKSFESMDHWKRELSASAPSDTIVALVGNKCDLHLKREVDSKHGRAYATRHGMMF LETSAKLGTNIDELFHHLGVSVAENTLSFSSLDKTPIDVRRITRPINISPKEEETKSRCCRSGH |
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